Re: coarse-grained model building

From: Anton Arkhipov (anton_at_ks.uiuc.edu)
Date: Tue Apr 06 2010 - 10:31:57 CDT

Ed,

There's a useful manual for cgtools, which is a VMD plugin that can do
what you ask:

http://www.ks.uiuc.edu/Research/vmd/plugins/cgtools/

If you are doing shape-based coarse-graining, there's also a tutorial,
please see at the bottom of this page:

http://www.ks.uiuc.edu/Training/Tutorials/

Anton.

On Apr 5, 2010, at 11:12 AM, Edward Lyman wrote:

> Hi all,
>
> Is there any specific documentation about setting up coarse-grained
> simulations in NAMD (eg, how to generate psf, pdb, and parameter
> inputs)? Or is this still at the 'do it yourself' stage?
>
> Thanks very much,
> Ed
>

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