Parameters/topology entries for non-standard nucleotides

From: Thomas Kahn (tkahn_at_usc.edu)
Date: Fri Feb 19 2010 - 16:14:33 CST

Are there any databases of parameter and topology entries for NAMD? I am looking particularly for 4 non-standard nucleotides (DC, 5BU, OMC, GDP). I have found the topology repository located here: http://www.ks.uiuc.edu/Research/namd/wiki/index.cgi?ParameterTopologyRepository but this does not contain the parameters I need.

Thanks,
Thomas Kahn

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