From: gurunath katagi (gurukatagi_at_gmail.com)
Date: Mon Nov 30 2009 - 11:55:34 CST
I am calculating the average RMSD over time of each residue in a protein
molecule which has multiple chains (four ).(RMSD for individual residue
My question is whether we need to calculate the Average RMSD of each residue
for each individual chain or take it has whole (four chains ).
Because , when i did by both methods (taking the RMSD chain wise or as a
whole), i am getting different RMSD values for each residue . I am not
getting why there is a difference for individual residue and whether i need
to take the RMSD for individual residue at once or chain wise ?
-- Gurunath M Katagi Graduate Research Student Bio molecular computation Laboratory Supercomputer Education & Research Center Indian Institute Of Science, Bangalore- 560012 Karnataka State, India Phone:080-22932737-319,080-22933061 email: gurunath_at_rishi.serc.iisc.ernet.in
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