Fwd: vmd-l: CG bead definition

From: BIN ZHANG (zhngbn_at_gmail.com)
Date: Tue Oct 20 2009 - 11:19:30 CDT

Hi Valeria,

While working with RBCG, it's better to solvate the cg protein with
coarse-grained water, rather than coarse graining all-atom water. This
can be done using the scripts provided by Anton, as forwarded below.

Best,
Bin

Begin forwarded message:

> From: Anton Arkhipov <anton_at_ks.uiuc.edu>
> Date: August 31, 2009 9:24:05 PM PDT
> To: vmd-l_at_ks.uiuc.edu
> Cc: Yannick Misteli <yannickmisteli_at_berkeley.edu>, wang <c00jsw00_at_nchc.org.tw
> >
> Subject: Re: vmd-l: CG bead definition
>
> Hi,
>
> Because of several questions about the files for RBCG modeling in
> VMD, I have put some useful files on the web. Please see here:
>
> http://www.ks.uiuc.edu/Research/CG/rbcg/files/
>
> Best,
>
> Anton.
>
>
>
> On Aug 25, 2009, at 3:02 PM, Yannick Misteli wrote:
>
>> Hi Anton,
>>
>> I was reading your thread on the vmd/namd mailing list about
>> cgbuilder and was wondering if you could provide me with the files
>> as well (dopc.cgc, lipid.cgc ect.)?
>>
>> Thanks a lot
>>
>> ~yannick
>>
>
>
>
> On Aug 26, 2009, at 12:46 AM, wang wrote:
>> Dear Anton,
>> Could you sent the two files (lipid.cgc and dopc.cgc) to me?
>> Thanks
>>
>> Y.T Wang
>>
>>
>> <c00jsw00.vcf>
>>

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