Re: About SMD

From: Roman Petrenko (rpetrenko_at_gmail.com)
Date: Thu Aug 13 2009 - 10:33:34 CDT

i'd start with NAMD user guide. that's a good starting point for
people new to namd.

wget "http://www.ks.uiuc.edu/Research/namd/2.7b1/ug.pdf"

On Tue, Aug 11, 2009 at 11:11 PM, Yang MIngjun<yangzch_at_mail.ustc.edu.cn> wrote:
> Dear NAMD users,
>
>     We are going to examine what happens when a dimer of proteins dissociate from each other. I am not sure which method is appropriate for this purpose. Is SMD ok?
>
> I am new to NAMD, so further suggestions on this question are greatly appreciated.
>
>
> Many thanks.
>
>
> Yang
> ---------
> DICP,CAS
>
>
>

-- 
Roman Petrenko
Physics Department
University of Cincinnati

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