Re: question about using Amber force field in namd

From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Wed Jun 02 2004 - 16:07:28 CDT

Hello Jeny,

What part of this page has you stuck?

http://www.ks.uiuc.edu/Research/namd/current/ug/node15.html

if you are needing to use the amber functions of NAMD then you must have a
an amber parm file laying around. This rest is as stated on the above web
page.

Brian

 On Wed, 2 Jun 2004 jz7_at_duke.edu wrote:

> Dear all,
>
> I am trying to use Amber force field in NAMD. After reading the User's
> manual, I am still not quite clear about how to do that. So I am
> wondering if there are some sample inputs for generating PSF file,
> minimization, etc. I have some experience on using NAMD with Charmm
> force field. What's the difference between using Amber and using Charmm
> in NAMD?
>
> Thanks a lot!
>
> Sincerely,
> Jeny
>

*****************************************************************
**Brian Bennion, Ph.D. **
**Computational and Systems Biology Division **
**Biology and Biotechnology Research Program **
**Lawrence Livermore National Laboratory **
**P.O. Box 808, L-448 bennion1_at_llnl.gov **
**7000 East Avenue phone: (925) 422-5722 **
**Livermore, CA 94550 fax: (925) 424-6605 **
*****************************************************************

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 05:18:15 CST