Re: Software to Mutate DNA

From: gaillard_at_chimie.u-strasbg.fr
Date: Tue May 26 2009 - 09:35:18 CDT

sunita gupta <sunita.bio_at_gmail.com> a écrit :
> Hi all,
>
> In order to study the interaction of Protein-DNA compex, i need to mutate
> the DNA for eg. A->T and G->C. Can anyone tell me any software which does
> this? The mutate residue plugin in VMD,strictly says "it cant be
> used for DNA":(
> Thanking in Advance
>
> Best Regards
> Sunita Gupta

You can do this with 3DNA or NAB:

http://rutchem.rutgers.edu/~xiangjun/3DNA/

http://ambermd.org/#AmberTools

Thomas Gaillard

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