RE: how to generate your own pdb file

From: Ahmet Bakan (abakan_at_ku.edu.tr)
Date: Fri May 14 2004 - 21:55:28 CDT

Hi,

You can try using HyperChem which is available for Windows. It has 30 days
evaluation period. You can download it from the below address:
http://www.hyper.com
I prepare novel compounds and large protein structures using this tool.
However, the PDB files that I generate need some modifications. If you have
not experienced, I suggest you using TextPad 4.72 which is a quite powerful
text editor for Windows. This program sometimes reminds you to buy a
lisence. Here it's address:
http://www.textpad.com/

Ahmet

==========ABC==========
Ahmet Bakan
Chemistry, Junior
Koc University
abakan_at_ku.edu.tr
ICQ #86167698
http://home.ku.edu.tr/~abakan

-----Original Message-----
From: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] On Behalf
Of Tim Isgro
Sent: Saturday, May 15, 2004 1:26 AM
To: myang
Cc: namd-l_at_ks.uiuc.edu
Subject: Re: namd-l: how to generate your own pdb file

Hi,
I know the programs MOE and SPARTAN will allow you to generate structures,
and save them as a pdb. You can energy minimize, too. Neither is free,
however.
Tim

On Wed, 12 May 2004, myang wrote:

> Hi
> I have a question. Now I want to generate my own .pdb file
> For example: a nanotube
> Does anyone know some software to generate pdb file.
> Or one must generate by himself
> mo
>
>
>

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