Re: Amber on with H-bond

From: Sichun Yang (syang_at_physics.ucsd.edu)
Date: Thu Mar 04 2004 - 00:15:56 CST

Thank you for your explanation, Fangqiang.

How can you check these two warnings will not affect the simulation?
I am just curious.

>
> None of these two warnings should affect the correctness of the simulation.
>
> Zhu, Fangqiang
>
>
> Sichun Yang wrote:
>
> > Dear All,
> >
> > I run the simulaiton with AMBER on.
> > But in the output, I found the warning message.
> >
> > Reading parm file (new.prmtop) ...
> > PARM file in AMBER 7 format
> > Warning: Encounter 10-12 H-bond term
> > Warning: Found 4879 H-H bonds.
> >
> > What does this mean? Any hint?
> > In the manual, it says NAMD might terminate when not-zero 10-12 papameters
> > are there in PARM file. However, NAMD continues to run in my case.
> > So what happened?
> >
> > Thanks,
> > Sichun
>
>

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