Re: LDB questions/problems

From: himanshu chandola (beu99419_at_ccsun50.iitd.ernet.in)
Date: Tue Dec 16 2003 - 00:29:26 CST

I was getting the same kinda errors when i used to run it on a solaris box
.Though in my case the namd would give ldb messages - stay there for a
few minutes and then crash showing memory problems. Reducing the number of
processes helped and removed this problem from reappearing.

You can just try this perhaps!

cheers

himanshu

----------------------------------------
Morpheus: Do you believe in fate, Neo?
Neo: No.
Morpheus: Why Not?
Neo: Because I don't like the idea that I'm not in control of my life.

On Mon, 15 Dec 2003, Brian Bennion wrote:

>
> Hello,
>
> I am attempting to minimize a large system. I call for 100 steps of min,
> however, at the 10th step the load distribution system kicks in, gives the
> following message in the log and stays there for at least 20 minutes at
> which point I get kicked out of the queue. I turn the balancer off, with
> ldbstrategy none and things progress, but not without many stray pme grid
> errors.
>
> Any insight?
> Brian
>
> log snippet....
>
> ENERGY: 9 4446565.9422 815057.1233 0.0000
> 0.0000 -8238197.7208 17559560.4307 0.0000 0.0000
> 0.0000 14582985.7753 0.0000 14582985.7753 14582985.7753
> 0.0000 228178.0317 226466.3996 35898114.1381 228178.0317
> 226466.3996
>
> LDB: LOAD: AVG 17.6773 MAX 22.956 MSGS: TOTAL 17196 MAXC 336 MAXP 5
> None
> LDB: LOAD: AVG 17.6773 MAX 21.2128 MSGS: TOTAL 20029 MAXC 633 MAXP 6
> Alg7
>
> --
> *****************************************************************
> **Brian Bennion, Ph.D. **
> **Computational and Systems Biology Division **
> **Biology and Biotechnology Research Program **
> **Lawrence Livermore National Laboratory **
> **P.O. Box 808, L-448 bennion1_at_llnl.gov **
> **7000 East Avenue phone: (925) 422-5722 **
> **Livermore, CA 94550 fax: (925) 424-6605 **
> *****************************************************************
>
>
>
>

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