hydrogengroupsize of 0!

From: Brian Bennion (brian_at_youkai.llnl.gov)
Date: Wed Nov 26 2003 - 17:57:28 CST

Hello,

Has anyone seen this error before? My system is quite large but I know
others have done larger.
Below is a snippet of the log file.

Brian

nfo: ****************************
Info: STRUCTURE SUMMARY:
Info: 4877547 ATOMS
Info: 3251698 BONDS
Info: 1625849 ANGLES
Info: 0 DIHEDRALS
Info: 0 IMPROPERS
Info: 0 EXCLUSIONS
Info: 14632638 DEGREES OF FREEDOM
Info: 1625849 HYDROGEN GROUPS
Info: TOTAL MASS = 2.92903e+07 amu
Info: TOTAL CHARGE = 0 e
Info: *****************************
Info: Entering startup phase 0 with 749551 kB of memory in use.
Info: Entering startup phase 1 with 749551 kB of memory in use.
Info: Entering startup phase 2 with 1054811 kB of memory in use.
Info: Entering startup phase 3 with 1092919 kB of memory in use.
Info: PATCH GRID IS 11 (PERIODIC) BY 11 (PERIODIC) BY 11 (PERIODIC)
Info: REMOVING COM VELOCITY 0.000438623 -0.000183485 0.000199183
BUG ALERT: Mother atom with hydrogenGroupSize of 0!
BUG ALERT: NAMD has detected a bug. Please notify namd_at_ks.uiuc.edu.
BUG ALERT: Mother atom with hydrogenGroupSize of 0!
BUG ALERT: NAMD has detected a bug. Please notify namd_at_ks.uiuc.edu.
[0] MPI Abort by user Aborting program !

-- 
*****************************************************************
**Brian Bennion, Ph.D.                                         **
**Computational and Systems Biology Division                   **
**Biology and Biotechnology Research Program                   **
**Lawrence Livermore National Laboratory                       **
**P.O. Box 808, L-448    bennion1_at_llnl.gov                     **
**7000 East Avenue       phone: (925) 422-5722                 **
**Livermore, CA  94550   fax:   (925) 424-6605                 **
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