From: li (zlee_at_ustc.edu)
Date: Sat Nov 06 2004 - 20:13:26 CST
Below is a nice solution to this problem here.
"First of all make sure you do these things first:  CHECK THAT YOUR DIHEDRALS/BOND ANGLES are defined in your .psf file! ( I got this error "ERROR: Constraint failure in RATTLE algorithm for atom " before and it was because of a screwed up .psf)  Minimize until 'gradient tolerance' is below 1 or so.  Heat the system from O K to your temperature of interest slowly. (e.g. I heat mine from 0K to 300 K over 300 000 ps )"
For my system,when the time step was set to 1 fs, every run was ok. But after the time step was set to 2 fs,even when I had minimized it until gradient tolerance was 0.1 or so and equilibarted for a fairly long time with the time step set to 1 fs, this error still came out once in a while.
Is there any other cause for this problem?-- USTC Alumni Email System
USTC Alumni Email System
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:37:58 CST