counterion software

From: Cetin Baloglu (cetinb_at_su.sabanciuniv.edu)
Date: Sun Oct 10 2004 - 23:51:56 CDT

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Hi,
I want to add some amount of chloride as counterion to my protein file,
before running with namd. To be more effective , I don't want to do it
manually. There is a program for that purpose on site ,unfortunately it
works only for sodium ion. I checked the C file, but couldn't find the
variable to change sodium ion charge so as to mimick a negative ion. Can
you offer me a script or a small program for that purpose.

thanks in advance.
Cetin Baloglu

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