From: Xiaobing Tian (xiaobing_at_tesla.jci.tju.edu)
Date: Fri Apr 30 2004 - 14:56:18 CDT
Hi, Cheri, Himanshu and Mike,
The parser works well in my computer. I really appreciated your hlep.
Cheers
Xiaobing
Cheri M Turman wrote:
>Hi Xiaobing,
>Sorry for the mixup. The filename you should put in is the NAMD log
>parser. For example:
>java -jar NAMD_parser.jar
>
>You might have to wait awhile for the program to open. Once open,
>there is an open file button where you actually open the log file from
>NAMD. Hope this helps.
>Cheers,
>Cheri
>~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Cheri M. Turman
> Graduate Student
> University of Texas-Houston Medical School
> 6431 Fannin
> Houston, TX 77030 USA
>
> e-mail: cheri.m.turman_at_uth.tmc.edu
> Ph.: 713-500-6126
> Fax: 713-500-0652
>
>----- Original Message -----
>From: Xiaobing Tian <xiaobing_at_tesla.jci.tju.edu>
>Date: Thursday, April 29, 2004 4:25 pm
>Subject: Re: namd-l: NAMD parser
>
>
>
>>Hi, Cheri,
>>
>>Thank you for your reply. I uncompressed the .jar file and tried
>>to use it
>>as you said in your email. But it retured a error massege as follows.
>>How to fix this problem?
>>[root_at_tesla]# java -jar ubq_wb_eq.log
>>java: Command not found.
>>[root_at_tesla]# ls
>>NAMD_parser$1.class NAMD_parser$8.class
>>NAMD_parser$2.class NAMD_parser.class
>>NAMD_parser$3.class NAMD_parser$DataGraph.class
>>NAMD_parser$4.class NAMD_parser$FilterCSV.class
>>NAMD_parser$5.class NAMD_parser$FilterNAMD.class
>>NAMD_parser$6.class NAMD_parser$HighlightTableCellRenderer.class
>>NAMD_parser$7.class ubq_wb_eq.log
>>
>>Thank you for your time,
>>
>>Xiaobing
>>
>>
>>Cheri M Turman wrote:
>>
>>
>>
>>>Hi Xiaobing,
>>>Make sure you downloaded the .jar and all you need to do to
>>>
>>>
>>execute is
>>
>>
>>>type
>>>java -jar <filename>
>>>in the console. Make sure you are in the directory where the
>>>executable is located. Let me know if you have any problems!
>>>
>>>
>>Also,
>>
>>
>>>you can email Eric, who wrote the program, at
>>>tox6sed8u_at_users.sourceforge.net if need be.
>>>Cheers,
>>>Cheri
>>>
>>>~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>>> Cheri M. Turman
>>> Graduate Student
>>> University of Texas-Houston Medical School
>>> 6431 Fannin
>>> Houston, TX 77030 USA
>>>
>>> e-mail: cheri.m.turman_at_uth.tmc.edu
>>> Ph.: 713-500-6126
>>> Fax: 713-500-0652
>>>
>>>----- Original Message -----
>>>From: Xiaobing Tian <xiaobing_at_tesla.jci.tju.edu>
>>>Date: Thursday, April 29, 2004 11:16 am
>>>Subject: namd-l: NAMD parser
>>>
>>>
>>>
>>>
>>>
>>>>Hi, Cheri,
>>>>
>>>>I installed the parser in my Linux Red Hat 8.0. Could you tell
>>>>
>>>>
>>us
>>
>>
>>>>how
>>>>to use it ?
>>>>
>>>>Thank you very much
>>>>
>>>>--
>>>>Xiaobing Tian, Ph.D.
>>>>Department of Biochemistry & Molecular Pharmacology
>>>>Thomas Jefferson University
>>>>233 South 10th Street, Suite 219
>>>>Philadelphia PA19107
>>>>
>>>>voice: 215-955-1364 fax: 215-955-4580, 215-923-9214
>>>>website: http://tesla.jci.tju.edu
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>--
>>Xiaobing Tian, Ph.D.
>>Department of Biochemistry & Molecular Pharmacology
>>Thomas Jefferson University
>>233 South 10th Street, Suite 219
>>Philadelphia PA19107
>>
>>voice: 215-955-1364 fax: 215-955-4580, 215-923-9214
>>website: http://tesla.jci.tju.edu
>>
>>
>>
>>
>>
>>
>>
-- Xiaobing Tian, Ph.D. Department of Biochemistry & Molecular Pharmacology Thomas Jefferson University 233 South 10th Street, Suite 219 Philadelphia PA19107 voice: 215-955-1364 fax: 215-955-4580, 215-923-9214 website: http://tesla.jci.tju.edu
This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:37:34 CST