From: AHMET BAKAN (ABAKAN_at_KU.EDU.TR)
Date: Sun Dec 07 2003 - 10:08:47 CST
Hi all,
I have defined a residue of 127 atoms for a polymeric chain sample. PDB file for one residue ends as below:
ATOM 121 H37A PEU 1 10.644 13.121 4.721
ATOM 122 H37B PEU 1 10.636 11.621 3.747
ATOM 123 H35A PEU 1 8.672 12.464 5.957
ATOM 124 H35B PEU 1 8.331 12.205 4.223
ATOM 125 HN7 PEU 1 10.782 12.241 7.516
ATOM 126 HN8A PEU 1 14.809 13.096 7.122
ATOM 127 HN8B PEU 1 14.063 12.139 5.886
The problem is that NAMD psfgen finds no residue. When I shift residue_name column to one left, psfgen finds a residue but does not read last 40 atoms. Is column with restricted in PDB files?? How can I overcome this problem?
Thank you very much,
Ahmet
==============ABC==============
Ahmet BAKAN
Chemistry, Junior
Koc University
abakan_at_ku.edu.tr
ICQ #86167698
http://home.ku.edu.tr/~abakan
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