From: himanshu chandola (beu99419_at_ccsun50.iitd.ernet.in)
Date: Wed Nov 19 2003 - 11:32:17 CST
What Zhu has said - that's the solution more or less. Below is the
part of the solution i got from Dr. Mackerell.
I have made the changes but still one small error remains -
CAN'T FIND BOND PARAMETERS FOR BOND CN7B - CN7B IN PARAMETER FILES
am looking out for it wat went wrong.
It is a simple fix, as follows.
in ATP or ADP (or G etc.) change the following atom types
ATOM C2' CN7 0.14 !
ATOM C2' CN7B 0.14 !
ATOM C5' CN8 -0.08
ATOM C5' CN8B -0.08
and everything should be fine.
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