Topology file for model compounds

From: AHMET BAKAN (ABAKAN_at_KU.EDU.TR)
Date: Tue Oct 14 2003 - 10:24:40 CDT

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Hi,
I want to do molecular dynamics on some model compounds. I will use Charmm22 parameter file, however I cannot find the molecule in the top_all22_model.inp. How can I build a new compound and do MD using NAMD. Is there a non-commercial program?
Thanks,
AB
==============ABC==============
Ahmet BAKAN
Chemistry, Junior
Koc University
abakan_at_ku.edu.tr
ICQ #86167698
http://home.ku.edu.tr/~abakan

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