NAMD: File Members

_ | a | b | c | d | e | f | g | h | i | j | l | m | n | o | p | r | s | t | u | v | w | x | y | z

- _ -

_FILE_OFFSET_BITS : largefiles.h
_LARGEFILE_SOURCE : largefiles.h
_REAL : parm.h

- a -

ADD_TENSOR : ReductionMgr.h
ADD_TENSOR_OBJECT : ReductionMgr.h
ADD_VECTOR : ReductionMgr.h
ADD_VECTOR_OBJECT : ReductionMgr.h
ALCH : ComputeNonbondedBase.h
ALCHPAIR : ComputeNonbondedBase.h
ALIGN_8 : packmsg.h
ALL : Communicate.h
ALLBUTME : Communicate.h
ANGLES : GromacsTopFile.C
ANGLETYPES : GromacsTopFile.C
ANY : Communicate.h
ASSERT : FreeEnergyAssert.h
ASSERT_HPP : FreeEnergyAssert.h
ATOMS : GromacsTopFile.C
ATOMTYPES : GromacsTopFile.C
AVGXY : Controller.C

- b -

BCASTMSGSIZE : BroadcastMgr.h
BOLTZMAN : common.h
BONDS : GromacsTopFile.C
BONDTYPES : GromacsTopFile.C
BUFSIZE : Communicate.h

- c -

C1 : SimParameters.h
CALCENERGY : ComputeNonbondedStd.C, ComputeNonbondedPProf.C, ComputeNonbondedLES.C, ComputeNonbondedFEP.C
CALCULATE : Controller.C
cbrt : Controller.C
CHDIR : SimParameters.C, mainfunc.C
CHECK_FEOF : dcdlib.C
CHECK_FREAD : dcdlib.C
CHECKATOMID : Molecule.C, CompressPsf.C
CLASS : ComputeNonbondedBase.h
CLASSNAME : ComputeNonbondedBase.h
CmiMemcpy : common.h
CMPSIGS : structures.h
COLOUMB : common.h
COMPUTE_CORRECTION : Rebalancer.h
COMPUTE_HOME_PRIORITY : Priorities.h
COMPUTE_LOAD : Rebalancer.C
COMPUTE_PROXY_PRIORITY : Priorities.h
CTRL_STK_SZ : Thread.h
CYCLE_BARRIER : common.h

- d -

dataelement_cons_macro : ParseOptions.C
dataelement_cons_macro_default : ParseOptions.C
DCD_BADEOF : dcdlib.h
DCD_BADFORMAT : dcdlib.h
DCD_BADMALLOC : dcdlib.h
DCD_BADREAD : dcdlib.h
DCD_DNE : dcdlib.h
DCD_FILEEXISTS : dcdlib.h
DCD_OPENFAILED : dcdlib.h
Debug : Debug.h
DEBUG_LEVEL : LdbCoordinator.C
DebugM : Debug.h
DEFAULTS : GromacsTopFile.C
DIHEDRALS : GromacsTopFile.C
DIHEDRALTYPES : GromacsTopFile.C
DPMTATAG : common.h

- e -

END_OF_RUN : Output.h
ENERGY : ComputeNonbondedBase.h
ENERGYNAME : ComputeNonbondedBase.h
ENUMS_HPP : FreeEnergyEnums.h
EVAL_MEASURE : Output.h
EXCHCK_FULL : Molecule.h
EXCHCK_MOD : Molecule.h
EXCLUDED : ComputeNonbondedBase2.h, ComputeNonbondedBase.h
EXPAND_INNER_BRICK : RefineTorusLB.C

- f -

FALSE : common.h
FAST : ComputeNonbondedBase.h
FASTER : ComputeCrossterms.C
FBUFSIZE : dcdlib.C
FEP : ComputeNonbondedBase2.h, ComputeNonbondedBase.h
FEPFLAG : ComputeNonbondedFEP.C
FEPNAME : ComputeNonbondedBase.h
FILE_OUTPUT : Output.h
FLIPEIGHT : flipdcd.c
FLIPFOUR : flipdcd.c
FULL : ComputeNonbondedBase.h
FULLDIRECT_PERIODIC : ComputeFullDirect.C
FULLELECT : ComputeNonbondedStd.C, ComputeNonbondedPProf.C, ComputeNonbondedLES.C, ComputeNonbondedFEP.C
FULLELECTNAME : ComputeNonbondedBase.h
FULLFORCETAG : common.h
FULLTAG : common.h

- g -

GET_TENSOR : ReductionMgr.h
GET_VECTOR : ReductionMgr.h
GETCWD : mainfunc.C
GLOBALMASTERFREEENERGY_H : GlobalMasterFreeEnergy.h
GROUP_HPP : FreeEnergyGroup.h
GrowthFactor : ResizeArrayRaw.h

- h -

HBAcceptorAtom : structures.h
HBAntecedentAtom : structures.h
HBDonorAtom : structures.h
HBHydrogenAtom : structures.h
HEADERSIZE : imd.C
HydrogenAtom : structures.h

- i -

- j -

JOULES_PER_CALORIE : GromacsTopFile.C

- l -

LAM : ComputeNonbondedBase.h
LAMBDA_HPP : FreeEnergyLambda.h
LAMBDMGR_HPP : FreeEnergyLambdMgr.h
LAST : ComputeNonbondedBase.h
LDB_DEBUG : Rebalancer.h
LDBSTRAT_ALG7 : SimParameters.h
LDBSTRAT_ASB8 : SimParameters.h
LDBSTRAT_NONE : SimParameters.h
LDBSTRAT_OTHER : SimParameters.h
LDBSTRAT_REFINEONLY : SimParameters.h
LES : ComputeNonbondedBase.h
LESFLAG : ComputeNonbondedLES.C
LIMIT_SCALING : Controller.C
LINESIZE : PDB.C, GromacsTopFile.C
LOCALMOD : InfoStream.h, InfoStream.C, DataStream.h
LonepairAtom : structures.h
LONGNAMESIZE : GromacsTopFile.h
LSEEK : dcdlib.C

- m -

M_PI : pub3dfft.C, PmeBase.h
MAP_FILE : loaddcd.c, flipdcd.c, flipbinpdb.c, fixdcd.c, dumpdcd.c
MAX_ATOMTYPE_CHARS : Parameters.h
MAX_DEBUG_LEVEL : Debug.h
MAX_INTERNODE : ProxyMgr.C
MAX_MULTIPLICITY : Parameters.h
MAX_NEIGHBORS : common.h
MAX_SCRIPT_PARAM_SIZE : SimParameters.C, Node.h
MAXHGS : HomePatch.C
MAXNEIGHBOUR : RecBisection.h
MERGEELECT : ComputeNonbondedStd.C, ComputeNonbondedPProf.C, ComputeNonbondedLES.C, ComputeNonbondedFEP.C
MERGEELECTNAME : ComputeNonbondedBase.h
MIN_DEBUG_LEVEL : WorkDistrib.C, Sync.C, Sequencer.C, ScriptTcl.C, ReductionMgr.C, ProxyPatch.C, ProxyMgr.C, PatchMgr.C, PatchMap.C, Patch.C, Parameters.C, Node.C, NamdOneTools.C, MStream.C, Molecule.C, MigrateAtomsMsg.C, LdbCoordinator.C, HomePatch.C, GridForceGrid.C, GlobalMasterTMD.C, GlobalMasterTest.C, GlobalMasterTcl.C, GlobalMasterSMD.C, GlobalMasterServer.C, GlobalMasterMisc.C, GlobalMasterIMD.C, GlobalMasterFreeEnergy.C, GlobalMasterEasy.C, GlobalMaster.C, Debug.h, Controller.C, ComputePme.C, ComputePatchPair.C, ComputePatch.C, ComputeNonbondedSelf.C, ComputeNonbondedPair.C, ComputeMgr.C, ComputeMap.C, ComputeHomePatches.C, ComputeHomePatch.C, ComputeGridForce.C, ComputeGlobalMsgs.C, ComputeGlobal.C, ComputeFullDirect.C, ComputeExt.C, ComputeEwald.C, ComputeDPMTA.C, ComputeDPMEMsgs.C, ComputeDPME.C, Compute.C, BroadcastMgr.C, BroadcastClient.C, AtomMap.C
MinSize : ResizeArrayRaw.h
MODIFIED : ComputeNonbondedBase.h
MODULO : PatchMap.inl
MOLECULES : GromacsTopFile.C
MOLECULETAG : common.h
MOLECULETYPE : GromacsTopFile.C
MOVETO : Controller.C

- n -

NAIVE : SimParameters.h
NAMD_ComputeNonbonded_SortAtoms : common.h
NAMD_ComputeNonbonded_SortAtoms_LessBranches : common.h
namd_reciprocal : Vector.h
namd_rsqrt : Vector.h
NAMD_SeparateWaters : common.h
NAMD_write : dcdlib.C, common.h, common.C, dcdlib.C
namdMyNode : Output.C
NAME : ComputeNonbondedBase.h
NAMESIZE : GromacsTopFile.h
NBPAIR : ComputeNonbondedInl.h
NBSELF : ComputeNonbondedInl.h
NBTYPE : ComputeNonbondedStd.C, ComputeNonbondedPProf.C, ComputeNonbondedLES.C, ComputeNonbondedFEP.C
NBWORKARRAY : ComputeNonbondedUtil.h
NBWORKARRAYSINIT : ComputeNonbondedUtil.h
NFILE_POS : dcdlib.C
NO : common.h
NOENERGY : ComputeNonbondedBase.h
NOFULL : ComputeNonbondedBase.h
NONBOND : GromacsTopFile.C
NONE : SimParameters.h
NORMAL : ComputeNonbondedBase.h
NOSHORT : ComputeNonbondedBase.h
NOT_ALCHPAIR : ComputeNonbondedBase.h
NPRIV_POS : dcdlib.C
NSAVC_POS : dcdlib.C
NSTEP_POS : dcdlib.C

- o -

O_LARGEFILE : dcdlib.C
ONE : common.h
ONEFOUR : SimParameters.h
ONETHREE : SimParameters.h
ONETWO : SimParameters.h
order : PmeRealSpace.C
OxygenAtom : structures.h

- p -

PACK : PatchMap.C, packmsg.h, ComputeMap.C
PACK_AND_NEW_ARRAY : packmsg.h
PACK_ARRAY : packmsg.h
PACK_MEMORY : packmsg.h
PACK_MSG : ProxyMgr.C, MigrateAtomsMsg.C, ComputeGlobalMsgs.C, ComputeDPMEMsgs.C, packmsg.h
PACK_RESIZE : packmsg.h
PACK_THIS : packmsg.h
PACKMSG_CHECKSUM : packmsg.h
PACKN : PatchMap.C
PAIR : GromacsTopFile.C, ComputeNonbondedBase.h
paraCharmm : Parameters.h
paraXplor : Parameters.h
PARSE_ANYTHING : ParseOptions.h
PARSE_BIGREAL : ParseOptions.h
PARSE_BOOL : ParseOptions.h
PARSE_FLOAT : ParseOptions.h
PARSE_HPP : FreeEnergyParse.h
parse_input_macro : ParseOptions.C
parse_input_macro_b : ParseOptions.C
parse_input_macro_default : ParseOptions.C
parse_input_macro_default_b : ParseOptions.C
PARSE_INT : ParseOptions.h
PARSE_MULTIPLES : ParseOptions.h
PARSE_STRING : ParseOptions.h
parse_stringlist_macro : ParseOptions.C
PARSE_VECTOR : ParseOptions.h
PATCH_PRIORITY : Priorities.h
PATHSEP : SimParameters.C, mainfunc.C
PATHSEPSTR : SimParameters.C, mainfunc.C
pdbData : Output.C
PDBVELFACTOR : common.h
PDBVELINVFACTOR : common.h
PEMOD : ComputeFullDirect.C
PI : common.h
Pme2Particle : ComputeDPMEMsgs.h
PME_BARRIER : common.h
PME_GRID_PRIORITY : Priorities.h
PME_MAX_EVALS : ComputePme.h
PME_TRANS2_PRIORITY : Priorities.h
PME_TRANS_PRIORITY : Priorities.h
PME_UNGRID_PRIORITY : Priorities.h
PME_UNTRANS2_PRIORITY : Priorities.h
PME_UNTRANS_PRIORITY : Priorities.h
PmeVector : ComputeDPMEMsgs.h
PNPERKCALMOL : common.h
PPROF : ComputeNonbondedBase.h
PPROFFLAG : ComputeNonbondedPProf.C
PRESSUREFACTOR : common.h
PRIORITY_SIZE : Priorities.h
PROXY_CORRECTION : Rebalancer.h
PROXY_DATA_PRIORITY : Priorities.h
PROXY_LOAD : Rebalancer.C
PROXY_RESULTS_PRIORITY : Priorities.h
PROXYALLMSGBUFFERED : ProxyPatch.h
PROXYDATAMSGBUFFERED : ProxyPatch.h
PROXYMSGNOTBUFFERED : ProxyPatch.h

- r -

R_SMALL : fitrms.C
RAD2DEG : Output.C
RAND48_ADD : Random.h
RAND48_MASK : Random.h
RAND48_MULT : Random.h
RAND48_SEED : Random.h
READ : dcdlib.C
READINT : loaddcd.c, flipdcd.c, fixdcd.c, dumpdcd.c
REASSIGN : RefineTorusLB.C, Rebalancer.C
REDUCTION_MAX_CHILDREN : ReductionMgr.h
RESTRAINT_HPP : FreeEnergyRestrain.h
restrict : ComputeNonbondedInl.h
RIGID_ALL : SimParameters.h
RIGID_NONE : SimParameters.h
RIGID_WATER : SimParameters.h
RMGR_HPP : FreeEnergyRMgr.h

- s -

SCALED14 : SimParameters.h
SCRIPT_PARSE_BOOL : SimParameters.C
SCRIPT_PARSE_FLOAT : SimParameters.C
SCRIPT_PARSE_INT : SimParameters.C
SCRIPT_PARSE_STRING : SimParameters.C
SCRIPT_PARSE_VECTOR : SimParameters.C
SELF : ComputeNonbondedBase.h
SEQ : NamdNborLB.C
SEQ_STK_SZ : Thread.h
set_macro : ParseOptions.C
SET_PRIORITY : Priorities.h
SHARP : SimParameters.h
SHORT : ComputeNonbondedBase.h
SHRINK_INNER_BRICK : TorusLB.C
SIMPARAM : DumpBenchParams.h, DumpBench.C
simParams : Output.C
SIMPARAMSTAG : common.h
simple_set_macro : ParseOptions.C
SKIP : loaddcd.c, flipdcd.c, fixdcd.c, dumpdcd.c
SKIPFOUR : loaddcd.c, flipdcd.c, fixdcd.c, dumpdcd.c
SLOWONLY : ComputeNonbondedStd.C, ComputeNonbondedPProf.C, ComputeNonbondedLES.C, ComputeNonbondedFEP.C
SLOWONLYNAME : ComputeNonbondedBase.h
SMALLRAD : common.h
SMALLRAD2 : common.h
SPLIT_C1 : ComputeNonbondedUtil.C
SPLIT_NONE : ComputeNonbondedUtil.C
SPLIT_PATCH_HYDROGEN : SimParameters.h
SPLIT_PATCH_POSITION : SimParameters.h
SPLIT_SHIFT : ComputeNonbondedUtil.C
SPLIT_XPLOR : ComputeNonbondedUtil.C
SQRT_PI : ComputePme.C, ComputeExt.C
ST_NODE_LOAD : Rebalancer.C
STATICPARAMSTAG : common.h
STDERR_LEVEL : Debug.h
STRINGNULL : common.h
SYSTEM : GromacsTopFile.C

- t -

TBSOFT_TRACK_HOST : main.C
TBSOFT_TRACK_MAXLEN : main.C
TBSOFT_TRACK_PORT : main.C
TCL_STK_SZ : Thread.h
TENSOR : ReductionMgr.h
TI : ComputeNonbondedBase.h
TIFLAG : ComputeNonbondedFEP.C
TIMEFACTOR : common.h
TINY : HomePatch.C
TINYLOAD : AlgSeven.C, AlgNbor.C
TRACE_COMPOBJ_IDOFFSET : Compute.h
TRUE : common.h
TWOPI : common.h

- u -

UNKNOWN : GromacsTopFile.C
UnknownAtom : structures.h
UNPACK : PatchMap.C, ComputeMap.C
UNPACKN : PatchMap.C
USE_BARRIER : common.h

- v -

VARSIZE_ARRAY : varsizemsg.h
VARSIZE_DECL : varsizemsg.h
VARSIZE_MSG : varsizemsg.h
VECTOR : ReductionMgr.h
VECTOR_HPP : FreeEnergyVector.h
VERIFY : FreeEnergyAssert.h
VERLETI : SimParameters.h
VMDSOCKINTERNAL : vmdsock.C

- w -

WAT_TIP3 : common.h
WAT_TIP4 : common.h
WRAP : NamdNborLB.C
WRAPMODE_CELL : ComputeTclBC.C
WRAPMODE_INPUT : ComputeTclBC.C
WRAPMODE_NEAREST : ComputeTclBC.C
WRAPMODE_PATCH : ComputeTclBC.C

- x -

XPLOR : SimParameters.h
XXXBIGREAL : SimParameters.C, Controller.C

- y -

YES : common.h

- z -

ZERO : common.h

Generated on Sun Jul 6 04:07:48 2008 for NAMD by

1.3.9.1