Here is a list of all file members with links to the files they belong to:
- r -
- R_SMALL
: fitrms.C
- RAD2DEG
: Output.C
- RADTODEG
: TclVec.C
, Matrix4.C
- RAND48_ADD
: Random.h
- RAND48_MASK
: Random.h
- RAND48_MULT
: Random.h
- RAND48_SEED
: Random.h
- randtopo
: WorkDistrib.C
- Range
: ParseOptions.h
- RANGE
: NamdTypes.h
- rattleN()
: Settle.C
, Settle.h
- rattlePair()
: Settle.C
, Settle.h
- rattlePair< 1 >()
: Settle.C
- READ
: dcdlib.C
- read_binary_coors()
: NamdOneTools.C
, NamdOneTools.h
, NamdState.C
, ScriptTcl.C
- read_binary_file()
: NamdOneTools.C
, NamdOneTools.h
- read_CUDA_ARCH()
: DeviceCUDAkernel.cu
- read_CUDA_ARCH_kernel()
: DeviceCUDAkernel.cu
- read_dcdheader()
: dcdlib.h
- read_dcdstep()
: dcdlib.h
- ReadAlpha()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadAlphaNum()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadAValue()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadBound()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadChar()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadDigits()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadInput()
: FreeEnergyParse.C
, FreeEnergyParse.h
- READINT
: dumpdcd.c
, fixdcd.c
, flipdcd.c
, loaddcd.c
- ReadNextItem()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadNextPmfSpec()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadNextRestraintType()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadParentheses()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadPmfBlock()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadRestraints()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadTaskType()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadTimeUnits()
: FreeEnergyParse.C
, FreeEnergyParse.h
- readtoeoln()
: parm.C
, PDB.C
- ReadWhite()
: FreeEnergyParse.C
, FreeEnergyParse.h
- ReadWord()
: FreeEnergyParse.C
, FreeEnergyParse.h
- Real
: common.h
, GromacsTopFile.h
- RealList
: NamdTypes.h
- reallocate_device()
: CudaUtils.h
- reallocate_device_T()
: CudaUtils.C
, CudaUtils.h
- reallocate_host()
: CudaUtils.h
- reallocate_host_T()
: CudaUtils.C
, CudaUtils.h
- REASSIGN
: Rebalancer.C
, RefineTorusLB.C
- recursive_bisect_coord()
: WorkDistrib.C
- recursive_bisect_with_curve()
: WorkDistrib.C
- recvAck()
: DataExchanger.C
, DataExchanger.h
- recvBcast()
: DataExchanger.C
- recvCheckpointAck_handler()
: PatchMgr.C
, PatchMgr.h
- recvCheckpointCAck_handler()
: Node.C
- recvCheckpointCReq_handler()
: Node.C
- recvCheckpointLoad_handler()
: PatchMgr.C
, PatchMgr.h
- recvCheckpointReq_handler()
: PatchMgr.C
, PatchMgr.h
- recvCheckpointStore_handler()
: PatchMgr.C
, PatchMgr.h
- recvData()
: DataExchanger.C
, DataExchanger.h
- recvEvalCommand()
: DataExchanger.C
- recvEvalResult()
: DataExchanger.C
- recvExchangeMsg_handler()
: PatchMgr.C
, PatchMgr.h
- recvExchangeReq_handler()
: PatchMgr.C
, PatchMgr.h
- recvRed()
: DataExchanger.C
- recvRedCalledEarly
: DataExchanger.C
- recvReplicaDcdAck()
: DataExchanger.C
, DataExchanger.h
- recvReplicaDcdData()
: DataExchanger.C
, DataExchanger.h
- recvReplicaDcdInit()
: DataExchanger.C
, DataExchanger.h
- reduceBondedBinsKernel()
: ComputeBondedCUDAKernel.cu
- reduceGBISEnergyKernel()
: CudaComputeNonbondedKernel.cu
- REDUCEGBISENERGYKERNEL_NUM_WARP
: CudaComputeNonbondedKernel.cu
- reduceNonbondedBinsKernel()
: CudaComputeNonbondedKernel.cu
- reduceNonbondedVirialKernel()
: CudaComputeNonbondedKernel.cu
- REDUCENONBONDEDVIRIALKERNEL_NUM_WARP
: CudaComputeNonbondedKernel.cu
- reduceVariables()
: ComputeNonbondedCUDAKernelBase.h
- reduceVirialEnergyKernel()
: CudaComputeNonbondedKernel.cu
- REDUCEVIRIALENERGYKERNEL_NUM_WARP
: CudaComputeNonbondedKernel.cu
- REDUCTION_ANGLE_CHECKSUM
: ReductionMgr.h
- REDUCTION_ANGLE_ENERGY
: ReductionMgr.h
- REDUCTION_ANISO_CHECKSUM
: ReductionMgr.h
- REDUCTION_ATOM_CHECKSUM
: ReductionMgr.h
- REDUCTION_BC_ENERGY
: ReductionMgr.h
- REDUCTION_BOND_CHECKSUM
: ReductionMgr.h
- REDUCTION_BOND_ENERGY
: ReductionMgr.h
- REDUCTION_BONDED_ENERGY_F
: ReductionMgr.h
- REDUCTION_BONDED_ENERGY_TI_1
: ReductionMgr.h
- REDUCTION_BONDED_ENERGY_TI_2
: ReductionMgr.h
- REDUCTION_CENTERED_KINETIC_ENERGY
: ReductionMgr.h
- REDUCTION_COMPUTE_CHECKSUM
: ReductionMgr.h
- REDUCTION_CROSSTERM_CHECKSUM
: ReductionMgr.h
- REDUCTION_CROSSTERM_ENERGY
: ReductionMgr.h
- REDUCTION_DIHEDRAL_CHECKSUM
: ReductionMgr.h
- REDUCTION_DIHEDRAL_ENERGY
: ReductionMgr.h
- REDUCTION_DRUDEBOND_CENTERED_KINETIC_ENERGY
: ReductionMgr.h
- REDUCTION_DRUDECOM_CENTERED_KINETIC_ENERGY
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_F
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_PME_TI_1
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_PME_TI_2
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_SLOW
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_SLOW_F
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_SLOW_TI_1
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_SLOW_TI_2
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_TI_1
: ReductionMgr.h
- REDUCTION_ELECT_ENERGY_TI_2
: ReductionMgr.h
- REDUCTION_EXCLUSION_CHECKSUM
: ReductionMgr.h
- REDUCTION_EXCLUSION_CHECKSUM_CUDA
: ReductionMgr.h
- REDUCTION_GO_NATIVE_ENERGY
: ReductionMgr.h
- REDUCTION_GO_NONNATIVE_ENERGY
: ReductionMgr.h
- REDUCTION_GRO_GAUSS_ENERGY
: ReductionMgr.h
- REDUCTION_GRO_LJ_CHECKSUM
: ReductionMgr.h
- REDUCTION_GRO_LJ_ENERGY
: ReductionMgr.h
- REDUCTION_HALFSTEP_KINETIC_ENERGY
: ReductionMgr.h
- REDUCTION_IMPROPER_CHECKSUM
: ReductionMgr.h
- REDUCTION_IMPROPER_ENERGY
: ReductionMgr.h
- REDUCTION_INT_CENTERED_KINETIC_ENERGY
: ReductionMgr.h
- REDUCTION_INT_HALFSTEP_KINETIC_ENERGY
: ReductionMgr.h
- REDUCTION_LJ_ENERGY
: ReductionMgr.h
- REDUCTION_LJ_ENERGY_F
: ReductionMgr.h
- REDUCTION_LJ_ENERGY_F_LEFT
: ReductionMgr.h
- REDUCTION_LJ_ENERGY_TI_1
: ReductionMgr.h
- REDUCTION_LJ_ENERGY_TI_2
: ReductionMgr.h
- REDUCTION_MARGIN_VIOLATIONS
: ReductionMgr.h
- REDUCTION_MAX_CHILDREN
: ReductionMgr.h
- REDUCTION_MAX_RESERVED
: ReductionMgr.h
- REDUCTION_MAX_SET_ID
: ReductionMgr.h
- REDUCTION_MIN_F_DOT_F
: ReductionMgr.h
- REDUCTION_MIN_F_DOT_V
: ReductionMgr.h
- REDUCTION_MIN_HUGE_COUNT
: ReductionMgr.h
- REDUCTION_MIN_V_DOT_V
: ReductionMgr.h
- REDUCTION_MISC_ENERGY
: ReductionMgr.h
- REDUCTION_MOMENTUM_MASS
: ReductionMgr.h
- REDUCTION_PAIRLIST_WARNINGS
: ReductionMgr.h
- REDUCTION_STRAY_CHARGE_ERRORS
: ReductionMgr.h
- REDUCTION_THOLE_CHECKSUM
: ReductionMgr.h
- REDUCTIONS_AMD
: ReductionMgr.h
- REDUCTIONS_BASIC
: ReductionMgr.h
- REDUCTIONS_MINIMIZER
: ReductionMgr.h
- REDUCTIONS_MULTIGRATOR
: ReductionMgr.h
- REDUCTIONS_PPROF_BONDED
: ReductionMgr.h
- REDUCTIONS_PPROF_INTERNAL
: ReductionMgr.h
- REDUCTIONS_PPROF_KINETIC
: ReductionMgr.h
- REDUCTIONS_PPROF_NONBONDED
: ReductionMgr.h
- REDUCTIONS_USER1
: ReductionMgr.h
- REDUCTIONS_USER2
: ReductionMgr.h
- ReductionTag
: ReductionMgr.h
- refLSSData
: ComputeQM.C
- refSelStrMap
: MoleculeQM.C
- refSelStrPair
: MoleculeQM.C
- refSelStrVec
: MoleculeQM.C
- register_cb()
: sortreplicas.c
, PluginIOMgr.C
, ScriptTcl.C
- register_cuda_compute_pair()
: ComputeNonbondedUtil.h
, ComputeNonbondedCUDA.C
- register_cuda_compute_self()
: ComputeNonbondedCUDA.C
, ComputeNonbondedUtil.h
- REGISTER_DEVICE_EVENTS
: DeviceCUDA.C
- register_exit_sched()
: BackEnd.C
- registerUserEventsForAllComputeObjs()
: Node.C
, ComputeMgr.C
- remote_submit_time
: ComputeNonbondedCUDA.C
- reOrderTileListDepth()
: CudaTileListKernel.cu
- repackTileListsKernel()
: CudaTileListKernel.cu
- REPACKTILELISTSKERNEL_NUM_WARP
: CudaTileListKernel.cu
- replica_barrier()
: DataExchanger.h
, DataExchanger.C
- replica_bcast()
: DataExchanger.C
, DataExchanger.h
- replica_eval()
: DataExchanger.h
, DataExchanger.C
- replica_hash()
: ScriptTcl.C
- replica_min_double()
: DataExchanger.C
, DataExchanger.h
- replica_recv()
: DataExchanger.C
, DataExchanger.h
- replica_send()
: DataExchanger.h
, DataExchanger.C
- replica_sendRecv()
: DataExchanger.C
, DataExchanger.h
- rescale_nonperiodic_cell()
: ComputeMsmSerial.C
- ResizeArrayGrowthFactor
: ResizeArrayRaw.h
- ResizeArrayMinSize
: ResizeArrayRaw.h
- resNamePool
: CompressPsf.C
- restr_t
: FreeEnergyParse.h
- restrict
: ComputeNonbondedInl.h
- restriction()
: msm_longrng.c
, msm_longrng_sprec.c
- restriction_factored()
: msm_longrng_sprec.c
, msm_longrng.c
- rgo
: ComputeNonbondedBase2.h
- RIGID_ALL
: SimParameters.h
- RIGID_NONE
: SimParameters.h
- RIGID_WATER
: SimParameters.h
- ROUNDUP_QUOTIENT
: MsmMacros.h
- rp1
: ComputeFullDirectBase.h
- rstring()
: ParseOptions.C