Here is a list of all class members with links to the classes they belong to:
- t -
- T
: IMDEnergies
- tab_pair_tree
: Parameters
- table_alloc
: ComputeNonbondedUtil
- table_ener
: ComputeNonbondedUtil
, Parameters
- table_length
: ComputeNonbondedUtil
- table_noshort
: ComputeNonbondedUtil
- table_row()
: LJTable
- table_short
: ComputeNonbondedUtil
- table_val()
: LJTable
- table_val_scale14()
: LJTable
- tableInterpType
: SimParameters
- tableMaxDist
: SimParameters
- tableNumTypes
: SimParameters
- tablenumtypes
: Parameters
- tableSpacing
: SimParameters
- tabulatedEnergies
: SimParameters
- tabulatedEnergiesFile
: SimParameters
- tag
: TaggedMsg
, StreamMessage
- TaggedMsg()
: TaggedMsg
- taggedMsg
: BOID
- tail_corr_dUdl_1
: Molecule
- tail_corr_dUdl_2
: Molecule
- tail_corr_ener
: Molecule
- tail_corr_virial
: Molecule
- tail_corr_virial_1
: Molecule
- tail_corr_virial_2
: Molecule
- takingLdbData
: LdbCoordinator
- task
: CheckpointMsg
, CheckpointAtomsReqMsg
, CheckpointAtomsMsg
- tavg_count
: Controller
- TAYLOR2
: ComputeMsmMgr
- TAYLOR2_DISP
: ComputeMsmMgr
- TAYLOR3
: ComputeMsmMgr
- TAYLOR3_DISP
: ComputeMsmMgr
- TAYLOR4
: ComputeMsmMgr
- TAYLOR4_DISP
: ComputeMsmMgr
- TAYLOR5
: ComputeMsmMgr
- TAYLOR5_DISP
: ComputeMsmMgr
- TAYLOR6
: ComputeMsmMgr
- TAYLOR6_DISP
: ComputeMsmMgr
- TAYLOR7
: ComputeMsmMgr
- TAYLOR7_DISP
: ComputeMsmMgr
- TAYLOR8
: ComputeMsmMgr
- TAYLOR8_DISP
: ComputeMsmMgr
- tclBCArgs
: SimParameters
- tclBCOn
: SimParameters
- tclBCScript
: SimParameters
- tclForcesOn
: SimParameters
- tclIsThreaded
: SimParameters
- tclmain()
: ScriptTcl
- tclsh()
: ScriptTcl
- tcoupleCoefficient
: ControllerBroadcasts
- tCoupleOn
: SimParameters
- tCoupleTemp
: SimParameters
- tcoupleVelocities()
: Controller
, Sequencer
- temp_avg
: Controller
- temperature
: eABF
, colvarproxy_namd
, Controller
- temperaturefactor()
: PDBAtom
- Tensor()
: Tensor
- TENSOR
: AngleElem
, AnisoElem
, BondElem
, CrosstermElem
, DihedralElem
, GromacsPairElem
, ImproperElem
, ExclElem
, ComputeNonbondedUtil
, TholeElem
- tensorMult()
: GridforceFullSubGrid
- Teq
: parm
, AmberParm7Reader::Ambertoppar
- TER
: PDBData
- terminate()
: Controller
, Sequencer
- testOn
: SimParameters
- tf
: ComputeGlobalDataMsg
- theLbdb
: LdbCoordinator
- ThereIsAForcingRestraint()
: ARestraintManager
- thermostat_temperature
: colvarproxy_namd
- theta0
: AngleValue
, CudaAngleValue
- thetax
: gather_t< T, order >
- thetay
: gather_t< T, order >
- thetaz
: gather_t< T, order >
- this_pe
: ComputePmeMgr
- thole
: drude_constants
- TholeElem
: Molecule
, TholeElem
- tholeEnergyIndex
: TholeElem
- tholeEnergyIndex_f
: TholeElem
- tholeEnergyIndex_ti_1
: TholeElem
- tholeEnergyIndex_ti_2
: TholeElem
- tholeij
: nbthole_pair_params
, indexed_nbthole_pair
, nbthole_pair_value
- thread
: BroadcastClient
- threadIsWaiting
: ReductionSet
- tiFile
: Controller
- tilesSizeExceeded
: TileListStat
- timer
: NL_Msm_t
, wkfmsgtimer
- timer_longrng
: NL_Msm_t
- timestep
: QMGrpCalcMsg
, ComputeNonbondedMIC
, QMCoordMsg
- timing
: MsmTimer
- TiNo
: Controller
- Tk
: AmberParm7Reader::Ambertoppar
, parm
- TMDDiffRMSD
: SimParameters
- TMDFile
: SimParameters
- TMDFile2
: SimParameters
- TMDFinalRMSD
: SimParameters
- TMDFirstStep
: SimParameters
- TMDInitialRMSD
: SimParameters
- TMDk
: SimParameters
- TMDLastStep
: SimParameters
- TMDOn
: SimParameters
- TMDOutputFreq
: SimParameters
- tmgr
: TopoManagerWrapper
, TopoManagerWrapper::pe_sortop_topo
- to
: LdbMigrateMsg
- TopoManagerWrapper()
: TopoManagerWrapper
- toRaw()
: ProxyCombinedResultMsg
- TorusLB()
: TorusLB
- total_forces_enabled()
: colvarproxy_namd
- totalAtoms
: MigrateAtomsCombinedMsg
, SimParameters
- totalCharge
: MolInfoMsg
- totalEnergy
: Controller
- totalEnergy0
: Controller
- totalForceBegin
: GlobalMaster
- totalForceRequested
: GlobalMaster
- totalforces
: ComputeGlobalResultsMsg
- totalGrids
: GridforceFullMainGrid
- totalMass
: MolInfoMsg
- totalMV
: MolInfoMsg
- totalStepsDone
: LdbCoordinator
- trace
: Tensor
- traceBarrier()
: Sequencer
, ControllerBroadcasts
, Node
, Controller
- traceStartStep
: SimParameters
- trans
: ComputeMap::PatchRec
, ComputePatchPair
, ComputeMap
, ComputeLCPO
- Transform()
: Transform
- transform
: FullAtom
- translate()
: Matrix4TMD
, Matrix4
, Matrix4Symmetry
, Matrix4
, Matrix4TMD
, Matrix4Symmetry
- transpose()
: Matrix4
, Matrix4Symmetry
, Matrix4TMD
, Tensor
- transposeXYZtoYZX()
: CudaPmeTranspose
, PmeTranspose
- transposeXYZtoZXY()
: PmeTranspose
, CudaPmeTranspose
- transvec()
: Matrix4
- transvecinv()
: Matrix4
- tree
: ProxySpanningTreeMsg
- TREE_WIDTH
: DataExchanger
- TreeJoin
: parm
, AmberParm7Reader::Ambertoppar
- trees
: ProxyTree
- triangular()
: Tensor
- tstep
: IMDEnergies
- tupleList
: ComputeHomeTuples< T, S, P >
- tupleParamType
: TupleSignature
- TuplePatchElem()
: TuplePatchElem
- tuplePatchList
: ComputeHomeTuples< T, S, P >
- TupleSignature()
: TupleSignature
- tupleType
: TupleSignature
- TURN
: PDBData
- TVECT
: PDBData
- twoAwayX
: SimParameters
- twoAwayY
: SimParameters
- twoAwayZ
: SimParameters
- TwoTargets()
: AFixedDiheRestraint
, ADiheRestraint
, ABoundDiheRestraint
, AForcingDiheRestraint
- type
: QMAtomData
, lssDistSort
, GridforceGrid
, ComputeMap::ComputeData
, ComputeMap
, PDBData
- Type
: AmberParm7Reader::FortranFormatSpecifier
- type
: ParseOptions::DataElement
- Type
: AmberParm7Reader::FortranData
- type
: IMDheader
, Compute
- tz
: wkf_timer