Here is a list of all class members with links to the classes they belong to:
- o -
- obj
: Entry< Elem >
- Object()
: AtomMap
, CollectionMaster
, LdbCoordinator
, Node
, CollectionMgr
, PatchMap
, PatchMgr
, BroadcastMgr
, ComputeMap
, ProxyMgr
, ReductionMgr
, ComputePmeCUDAMgr
, Sync
- ObjectArena()
: ObjectArena< Type >
- ObjectOnPe()
: PatchMap
- OBSLTE
: PDBData
- occupancy()
: PDBAtom
- off_diagonal
: Tensor
- offload
: PmePencil< T >
- offset
: ComputeNonbondedCUDA::compute_record
, ComputeNonbondedMIC::compute_record
, nonbonded
, CudaComputeNonbonded::ComputeRecord
, GridforceFullBaseGrid
, MoveAllByMsg
, TupleSignature
, Lattice
- offset12XYZ
: CudaCrossterm
- offset23XYZ
: CudaCrossterm
- offset34XYZ
: CudaCrossterm
- offset56XYZ
: CudaCrossterm
- offset67XYZ
: CudaCrossterm
- offset78XYZ
: CudaCrossterm
- offset_a()
: Lattice
- offset_b()
: Lattice
- offset_c()
: Lattice
- offset_f
: nonbonded
- offsetXYZ
: TileList
, CudaComputeRecord
- ofstream_namd()
: ofstream_namd
- okay()
: ConfigList
- old_num_groups_requested
: GlobalMaster
- oldParmReader
: SimParameters
- oldProcessor
: computeInfo
- omega
: ComputeMsmMgr
, InterpParams_t
- one_device_per_node()
: DeviceCUDA
- oneAwayNeighbors()
: PatchMap
- oneOrTwoAwayNeighbors()
: PatchMap
- open()
: Box< Owner, Data >
, ofstream_namd
, OwnerBox< Owner, Data >
- openBoxesOnPe()
: CudaComputeNonbonded
- openSync()
: Sync
- OperationStatus
: CollectionMaster
- operator bool()
: ofstream_namd
- operator const Real &()
: HashReal
- operator const T &()
: HashPoolAdaptorT< T >
- operator Real &()
: HashReal
- operator T &()
: HashPoolAdaptorT< T >
- operator!()
: ofstream_namd
- operator!=()
: idIndxStr
, ResizeArrayIter< Type >
, ResizeArrayPrimIter< T >
, Tensor
, UniqueSetIter< Type >
, Vector
- operator()()
: exlist_sortop
, pid_sortop_reverse_priority
, cr_sortop_distance
, cr_sortop_reverse_priority
, sortop_bit_reversed
, ijpair_sortop_bit_reversed
, pid_sortop_reverse_priority
, cr_sortop_distance
, cr_sortop_reverse_priority
, exlist_sortop
, atomID_less
, msm::GridFixed< T, N >
, msm::Grid< T >
, cptr_sortop_priority
, sortop_x
, sortop_y
, sortop_z
, pe_sortop_bit_reversed
, pe_sortop_coord_x
, pe_sortop_coord_y
, TopoManagerWrapper::pe_sortop_topo
, patch_sortop_curve_a
, patch_sortop_curve_b
, patch_sortop_curve_c
, WorkDistrib::pe_sortop_diffuse
, WorkDistrib::pe_sortop_compact
- operator*()
: AVector
, MathArray< Elem, Size >
, C1Vector
, C1Matrix
, ResizeArrayIter< Type >
, ResizeArrayPrimIter< T >
, Tensor
, UniqueSetIter< Type >
, Vector
- operator*=()
: floatcomplex
, AVector
, MathArray< Elem, Size >
, Tensor
, Vector
- operator+()
: AVector
, MathArray< Elem, Size >
, C1Vector
, Tensor
, Vector
- operator++()
: ResizeArrayIter< Type >
, ResizeArrayPrimIter< T >
, UniqueSetIter< Type >
- operator+=()
: floatcomplex
, AVector
, MathArray< Elem, Size >
, C1Vector
, msm::GridFixed< T, N >
, msm::Grid< T >
, Tensor
, Vector
- operator-()
: AVector
, MathArray< Elem, Size >
, Tensor
, Vector
- operator-=()
: MathArray< Elem, Size >
, Tensor
, Vector
- operator->()
: ResizeArrayIter< Type >
, UniqueSetIter< Type >
- operator/()
: AVector
, MathArray< Elem, Size >
, Tensor
, Vector
- operator/=()
: AVector
, MathArray< Elem, Size >
, Tensor
, Vector
- operator<()
: TuplePatchElem
, MovePatch
, meMMQMGrp
, ComputeQMPntChrg
, AngleElem
, AnisoElem
, BondElem
, CrosstermElem
, DihedralElem
, GromacsPairElem
, PatchElem
, ImproperElem
, ExclElem
, pntChrgDist
, idIndxStr
, lssDistSort
, LSSSubsDat
, TholeElem
, CudaComputeNonbonded::PatchRecord
, vmdforce
, HomePatchElem
, HydrogenGroupID
, qmSolvData
, InputAtom
, Exclusion
, nodesort
- operator<<()
: datastream
- operator<=()
: WorkIndex
, msm::IndexRange
- operator=()
: Flags
, MathArray< Elem, Size >
, AVector
, Array< Elem, Size >
, ExclusionSignature
, Array< Elem, Size >
, floatcomplex
, idIndxStr
, lssDistSort
, LSSSubsDat
, meMMQMGrp
, AGroup
, ALambdaControl
, vmdforce
, HomePatchElem
, MathArray< Elem, Size >
, Matrix4
, msm::Array< T >
, proxyTreeNode
, ResizeArrayIter< Type >
, ResizeArrayPrimIter< T >
, SortableResizeArray< Type >
, SortedArray< Type >
, TupleSignature
, AtomSignature
, Tensor
, UniqueSet< Elem >
, Entry< Elem >
, UniqueSetRaw< Elem >
, UniqueSortedArray< Type >
, Vector
, UniqueSortedArray< Type >
, UniqueSetIter< Type >
- operator==()
: qmSolvData
, lssDistSort
, LSSSubsDat
, meMMQMGrp
, CudaComputeNonbonded::PatchRecord
, vmdforce
, msm::Ivec
, ClusterCoorElem
, ProxyElem
, TupleSignature
, AtomSignature
, ExclusionSignature
, UniqueSetIter< Type >
, TuplePatchElem
, GromacsPairElem
, idIndxStr
, TholeElem
, Exclusion
, nodesort
, Vector
, Tensor
, MovePatch
, ResizeArrayPrimIter< T >
, ClusterElem
, ResizeArrayIter< Type >
, CrosstermElem
, ComputeQMPntChrg
, ExclElem
, BondElem
, HomePatchElem
, DihedralElem
, AnisoElem
, PatchElem
, BroadcastClientElem
, TaggedMsg
, AngleElem
, BOID
, ImproperElem
- operator[]()
: Array< Elem, Size >
, ARestraintManager
, msm::Array< T >
, ResizeArray< T >
, HashPool< T >
, msm::Array< T >
, AVector
, ALambdaManager
, Array< Elem, Size >
, ResizeArray< T >
, Vector
, AGroup
- optional()
: ParseOptions
- optionalB()
: ParseOptions
- order
: MoaData
, PmeGrid
- order_init()
: PmePencil< T >
- orig_x
: MoaData
- orig_y
: MoaData
- orig_z
: MoaData
- origID
: LSSSubsDat
- origin()
: Lattice
, GridforceFullBaseGrid
, GridforceLiteGrid
, PatchMap
- originalPosition
: GlobalMasterMisc
- origLattice
: Controller
- origMaxLoad
: Rebalancer
- origPe
: ProxyGBISP3DataMsg
, ProxyGBISP2ResultMsg
, ProxyGBISP2DataMsg
, ProxyGBISP1ResultMsg
- ORIGX
: PDBData
- ortho()
: Matrix4
- ortho2()
: Matrix4
- orthogonal()
: Lattice
- Out()
: AVector
- outer
: Tensor
- outerAdd()
: Tensor
- Output()
: Output
- output
: Node
- Output()
: AVector
- output()
: TupleSignature
- output_stream()
: colvarproxy_namd
- outputCudaTiming
: SimParameters
- outputEnergies
: SimParameters
- outputEnergiesPrecision
: SimParameters
- outputExtendedSystem()
: Controller
- outputFepEnergy()
: Controller
- outputfile
: eABF
- outputFilename
: SimParameters
- outputfreq
: eABF
- outputgrad
: eABF
- outputMaps
: SimParameters
- outputMomenta
: SimParameters
- outputOrderIndex
: TileListStat
- outputPairlists
: SimParameters
- outputPatchComputeMaps()
: Node
- outputPatchDetails
: SimParameters
- outputPressure
: SimParameters
- outputTiEnergy()
: Controller
- outputTiming
: SimParameters
- overflowAtom
: PmeAtomStorage
- overflowAtomIndex
: PmeAtomStorage
- overLoad
: Rebalancer
- OwnerBox()
: OwnerBox< Owner, Data >
- OwnerBox< Owner, Data >
: Box< Owner, Data >