Here is a list of all class members with links to the classes they belong to:
- f -
- f
: ComputeConsForceMsg
, ComputeGlobalResultsMsg
, TuplePatchElem
, Patch
, Results
, LCPOAtom
, PatchElem
, ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
- f1
: gather_t< T, order >
- f2
: gather_t< T, order >
- f3
: gather_t< T, order >
- f_0
: ComputeNonbondedWorkArrays
- f_data_dev
: ComputePmeMgr
- f_data_host
: ComputePmeMgr
- factor
: GridforceFullBaseGrid
- fail()
: ofstream_namd
- fast_table
: ComputeNonbondedUtil
- fAtoms
: GlobalMaster
- fdata
: CollectVectorMsg
, CollectionMaster::CollectVectorInstance
, CollectVectorVarMsg
, CollectionMgr::CollectVectorInstance
, CollectProxyVectorInstance
, ParseOptions::DataElement
- fdata_size
: CollectVectorMsg
- fdef
: ParseOptions::DataElement
- felec
: NL_Msm_t
- felec_f
: NL_Msm_t
- fepFile
: Controller
- FepNo
: Controller
- fepSum
: Controller
- ff
: nonbonded
- fflush_count
: Controller
- fft_init()
: PmeZPencil
, PmeYPencil
, PmeXPencil
- fftCompute
: PmePencilXYZ
, PmePencilXY
, PmePencilX
, PmePencilY
, PmePencilZ
- FFTCompute()
: FFTCompute
- fftw_plan_lock
: ComputePmeMgr
- FFTWEstimate
: SimParameters
- FFTWPatient
: SimParameters
- FFTWUseWisdom
: SimParameters
- FFTWWisdomFile
: SimParameters
- FFTWWisdomString
: SimParameters
- fgrid
: PmeGridMsg
- fid
: ComputeGlobalDataMsg
- field()
: PDBData
- FIELDS
: PDBData
- file
: FileStack
- fileAtoms()
: PmeAtomFiler
- filename
: FileStack
, GridforceFullMainGrid
, GridforceLiteGrid
- fill_charges()
: PmeRealSpace
- finalAvgPeLoad
: CollectLoadsMsg
- finalMaxPatchProxies
: CollectLoadsMsg
- finalMaxPeLoad
: CollectLoadsMsg
- finalMaxPeProxies
: CollectLoadsMsg
- finalMemory
: CollectLoadsMsg
- finalTime
: CollectLoadsMsg
- finalTotalProxies
: CollectLoadsMsg
- find()
: ConfigList
, ResizeArray< T >
, IRSet
, SortedArray< Type >
, UniqueSet< Elem >
, UniqueSetRaw< Elem >
- find_extremes()
: PDB
- find_key()
: MGridforceParamsList
- findOffset()
: ExclusionSignature
- finish()
: PmeAtomStorage
- finishCUDA()
: WorkDistrib
- finishCUDAP2()
: WorkDistrib
- finishCUDAP3()
: WorkDistrib
- finishCUDAPatch()
: WorkDistrib
- finishMIC()
: WorkDistrib
- finishPatch()
: Compute
, ComputeNonbondedCUDA
- finishPatchesOnPe()
: CudaComputeNonbonded
- finishPatchOnPe()
: CudaComputeNonbonded
- finishReductions()
: ComputeNonbondedCUDA
, CudaComputeNonbonded
- finishTileList()
: CudaTileListKernel
- finishWork()
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- first
: intpair
- first_timestep
: colvarproxy_namd
- firstAssignInRefine
: Rebalancer
- firstChild
: DataExchanger
- firstHoldableCompute
: Patch
- firstLdbStep
: LdbCoordinator
, SimParameters
- firstPe
: CollectLoadsMsg
- firstResid
: ResidueLookupElem
- firstTime
: GlobalMasterMisc
- firstTimestep
: SimParameters
- firstwat()
: parm
- fits_lattice()
: GridforceGrid
- fixCellDims
: SimParameters
- fixCellDimX
: SimParameters
- fixCellDimY
: SimParameters
- fixCellDimZ
: SimParameters
- fixedAtomsCntList
: AtomsCntPerPatchMsg
- fixedAtomsForceOutput
: SimParameters
- fixedAtomsForces
: SimParameters
- fixedAtomsOn
: ComputeNonbondedUtil
, SimParameters
- fixedPosition
: FullAtom
- fixglist
: ComputeNonbondedWorkArrays
- fixpe()
: TopoManagerWrapper
- flags
: ExclusionCheck
, Patch
, ProxyDataMsg
- flatindex()
: msm::GridFixed< T, N >
, msm::Grid< T >
- flip()
: OutputAtomRecord
- flLen
: ProxyResultVarsizeMsg
, ProxyCombinedResultRawMsg
- FLOAT
: ParseOptions::DataElement
- floatcomplex()
: floatcomplex
- FloatVector()
: FloatVector
- FloatVectorValid
: CollectVectorVarMsg
- flush()
: ofstream_namd
- flush_output_stream()
: colvarproxy_namd
- FMAFFTBlock
: SimParameters
- FMAFFTOn
: SimParameters
- FMALevels
: SimParameters
- FMAMp
: SimParameters
- FMAOn
: SimParameters
- fmaTheta
: SimParameters
- FMMLevels
: SimParameters
- FMMOn
: SimParameters
- FMMPadding
: SimParameters
- foldfactor
: msm::Map
- FoldFactor()
: msm::FoldFactor
- footnote()
: PDBAtom
- force
: ExtForceMsg
, FmmSerialForceMsg
, GBISForceMsg
, ComputeLCPO
, MsmSerialForceMsg
, PmeForceMsg
, PmeLaunchMsg
, QMGrpResMsg
, QMForceMsg
, QMForce
, Output
, GBISResults< 3 >
, vmdforce
, ExtForce
, PmeForcePencilMsg
, GBISResults< 2 >
, msm::PatchData
- forceArr
: ProxyResultVarsizeMsg
, ProxyCombinedResultRawMsg
- forceArray()
: msm::PatchData
- forceBox
: CudaComputeNonbonded::PatchRecord
, Patch
, ComputePatch
, PatchElem
, TuplePatchElem
, ComputeLCPO
, ComputePatchPair
, ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
- forceBoxClosed()
: Patch
- forceComputeList
: Patch
- forceconstant
: angle_params
, bond_params
- forcedAtoms()
: GlobalMaster
- forceDcdFilename
: SimParameters
- forceDcdFrequency
: SimParameters
- forceIdBegin
: GlobalMaster
- forceIdEnd
: GlobalMaster
- forceList
: ProxyCombinedResultMsg
, ProxyResultMsg
- forceNeeded()
: Output
- forces
: ComputeDPMEResultsMsg
, ComputeNonbondedMIC
, ComputeNonbondedCUDA
- forces_count
: ComputePmeMgr
- forces_done_count
: ComputePmeMgr
- forces_size
: ComputeNonbondedCUDA
- forces_time
: ComputePmeMgr
- forceSlowx
: TileListVirialEnergy
- forceSlowy
: TileListVirialEnergy
- forceSlowz
: TileListVirialEnergy
- forcex
: TileListVirialEnergy
- forcey
: TileListVirialEnergy
- forcez
: TileListVirialEnergy
- FORMUL
: PDBData
- FortranData()
: AmberParm7Reader::FortranData
- FortranDataType
: AmberParm7Reader::FortranData
- forward()
: CudaFFTCompute
, FFTCompute
- forward_fft()
: PmeZPencil
, PmeYPencil
, PmeXPencil
- forward_plan
: PmeXPencil
- forward_subset_fft()
: PmeYPencil
- fptr
: ParseOptions::DataElement
- free()
: CollectionMaster::CollectVectorInstance
, CollectionMgr::CollectVectorInstance
, CollectProxyVectorInstance
- freeBFactorData()
: Molecule
- freeEnergyOn
: SimParameters
- freeMolSpace()
: ParallelIOMgr
- freeOccupancyData()
: Molecule
- from
: MovePatchAtomsMsg
, LdbMigrateMsg
- fromNodeID
: MigrateAtomsCombinedMsg
, MigrateAtomsMsg
, MovePatchesMsg
- fromRaw()
: ProxyCombinedResultMsg
- fSet
: OutputAtomRecord
- fsMax
: GBISParamStruct
, SimParameters
- FTNOTE
: PDBData
- full_table
: ComputeNonbondedUtil
- fullDirectOn
: SimParameters
- fullElectEnergyIndex
: ComputeNonbondedUtil
, ExclElem
- fullElectEnergyIndex_s
: ComputeNonbondedUtil
- fullElectEnergyIndex_ti_1
: ComputeNonbondedUtil
- fullElectEnergyIndex_ti_2
: ComputeNonbondedUtil
- fullElectFrequency
: SimParameters
- fullExclCnt
: ExclusionSignature
- fullExclOffset
: ExclSigInfo
- fullf
: nonbonded
- fullf_0
: ComputeNonbondedWorkArrays
- fullOffset
: ExclusionSignature
- fwdSharedTrans()
: ComputePmeMgr
- fwdSharedUntrans()
: ComputePmeMgr