Here is a list of all class members with links to the classes they belong to:
- d -
- d00
: CrosstermData
- d01
: CrosstermData
- d10
: CrosstermData
- d11
: CrosstermData
- d_dim
: TopoManagerWrapper
- d_mod
: TopoManagerWrapper
- d_rot
: TopoManagerWrapper
- d_stencil_1d()
: ComputeMsmMgr
- d_stencil_1d_c1hermite()
: ComputeMsmMgr
- daCutoffDist
: SimParameters
- daOffDist
: SimParameters
- daOnDist
: SimParameters
- data
: CollectionMaster::CollectVectorSequence
, CollectProxyVectorInstance
, CollectProxyVectorSequence
, DataStreamMsg
, PAL
, PmeStartMsg
, CollectVectorVarMsg
, PmeBlockMsg
, PmeRealSpaceCompute
, CollectionMgr::CollectVectorInstance
, Pointer
, ConstPointer
, CollectionMgr::CollectVectorSequence
, ReductionSubmitMsg
, ReductionSetData
, PmePencilInitMsg
, FinishWorkMsg
, msm::Grid< T >
, PmePencil< T >
, msm::Grid< T >
, QMGrpCalcMsg
, StringList
, ConfigList::ConfigListNode
, Array< Elem, Size >
, DeviceBuffer
, DeviceDataMsg
, CollectVectorMsg
, DataMessage
, ReplicaDcdInitMsg
, CollectionMaster::CollectVectorInstance
, ReplicaDcdDataMsg
, StreamMessage
- data_in
: TransposeBatch< T >
- data_out
: TransposeBatch< T >
- data_read
: parm
- data_size
: CollectVectorMsg
- data_types
: ParseOptions::DataElement
- dataDst
: FFTCompute
- dataDstAllocated
: FFTCompute
- dataDstSize
: FFTCompute
- DataElement()
: ParseOptions::DataElement
- DataExchanger()
: DataExchanger
- dataExchanger
: BOCgroup
- DataExchanger
: ScriptTcl
- DataExchanger_SDAG_CODE
: DataExchanger
- dataQueue
: ReductionSet
- dataSize
: PmeStartMsg
, PmeBlockMsg
, PmeRealSpaceCompute
, PmeTranspose
, ReductionRegisterMsg
, ReductionSubmitMsg
, ReductionSet
- dataSrc
: FFTCompute
- dataSrcAllocated
: FFTCompute
- dataSrcSize
: FFTCompute
- DataStatus
: CollectVectorVarMsg
- datastream()
: datastream
- dcdFilename
: SimParameters
- dcdFrequency
: SimParameters
- dcdIndex
: ReplicaDcdInitMsg
, ReplicaDcdDataMsg
- dcdUnitCell
: SimParameters
- dE
: Controller
- deAssign()
: Rebalancer
- decrement()
: ProxyUsage
- decrSTLoad()
: Rebalancer
- dEdaSum
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, GBISParamStruct
, GBISResults< 2 >
, CudaComputeNonbonded::PatchRecord
, Patch
, ProxyGBISP2ResultMsg
- dEdaSumBox
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, ComputeNonbondedPair
, ComputeNonbondedSelf
, CudaComputeNonbonded::PatchRecord
, Patch
- dEdaSumBoxClosed()
: Patch
- dEdaSumComputeList
: Patch
- dEdaSumH
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- dEdaSumH_size
: ComputeNonbondedCUDA
- dEdaSumLen
: ProxyGBISP2ResultMsg
- default_border
: GridforceFullMainGrid
- default_coor
: PDBAtom
- default_occupancy
: PDBAtom
- default_residueseq
: PDBAtom
- default_serial
: PDBAtom
- default_temperaturefactor
: PDBAtom
- defined()
: ParseOptions
- del()
: ResizeArray< T >
, SortedArray< Type >
, UniqueSet< Elem >
, UniqueSetRaw< Elem >
- delete_alch_bonded()
: Molecule
- delete_qm_bonded()
: Molecule
- deleteCommands()
: Measure
- deleted
: heapRecord
- deleteMax()
: maxHeap
- deleteMin()
: minHeap
- delta()
: Lattice
- DELTA
: ReplicaDcdDataMsg
- delta
: GBISParamStruct
, four_body_consts
, CudaDihedralValue
- delTmpPatchAtomsList()
: PatchMap
- density
: NL_Msm_t
- depositCombinedResultMsg()
: ProxyPatch
- depositCombinedResultRawMsg()
: ProxyPatch
- depositMigration()
: HomePatch
- destElem
: PmeGridMsg
, PmeTransMsg
, PmeUntransMsg
- destNodeID
: MigrationInfo
- destPatchID
: MigrateAtomsMsg
, MigrateAtomsCombinedMsg
, MigrationInfo
- destPe
: ProxyGBISP1ResultMsg
, ProxyGBISP2DataMsg
, ProxyGBISP2ResultMsg
, ProxyGBISP3DataMsg
- dev
: RecvDeviceMsg
- device
: PmeStartMsg
- device_egrids
: NL_Msm_t
- device_qgrids
: NL_Msm_t
- device_shared_with_pe()
: DeviceCUDA
- DeviceBuffer()
: DeviceBuffer
- DeviceCUDA()
: DeviceCUDA
- DeviceDataMsg()
: DeviceDataMsg
- deviceID
: ComputeNonbondedCUDA
, InitDeviceMsg2
, DeviceBuffer
- devicelist
: cuda_args_t
- deviceProxy
: InitDeviceMsg
- devicesperreplica
: cuda_args_t
- dG
: Controller
- dhaCutoffAngle
: SimParameters
- dhaOffAngle
: SimParameters
- dhaOnAngle
: SimParameters
- dHdrPrefix
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, GBISParamStruct
, CudaComputeNonbonded::PatchRecord
, Patch
, ProxyGBISP3DataMsg
- dHdrPrefixBox
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, ComputeNonbondedPair
, ComputeNonbondedSelf
, CudaComputeNonbonded::PatchRecord
, Patch
- dHdrPrefixBoxClosed()
: Patch
- dHdrPrefixComputeList
: Patch
- dHdrPrefixI
: GBISInput< 3 >
- dHdrPrefixJ
: GBISInput< 3 >
- dHdrPrefixLen
: ProxyGBISP3DataMsg
- diagonal()
: Tensor
- dielectric
: SimParameters
- dielectric_1
: ComputeNonbondedUtil
- DihAt1
: parm
, AmberParm7Reader::Ambertoppar
- DihAt2
: parm
, AmberParm7Reader::Ambertoppar
- DihAt3
: AmberParm7Reader::Ambertoppar
, parm
- DihAt4
: parm
, AmberParm7Reader::Ambertoppar
- dihedral
: lphost
- dihedral_array
: Parameters
- dihedral_params()
: dihedral_params
- dihedral_type
: dihedral
- dihedralCnt
: AtomSignature
- DihedralElem()
: DihedralElem
, Molecule
, DihedralElem
- dihedralEnergyIndex
: DihedralElem
- dihedralEnergyIndex_f
: DihedralElem
- dihedralEnergyIndex_ti_1
: DihedralElem
- dihedralEnergyIndex_ti_2
: DihedralElem
- dihedralOn
: SimParameters
- dihedralSigIndices
: AtomSigInfo
- dihedralSigs
: AtomSignature
- DihHAt1
: parm
, AmberParm7Reader::Ambertoppar
- DihHAt2
: parm
, AmberParm7Reader::Ambertoppar
- DihHAt3
: parm
, AmberParm7Reader::Ambertoppar
- DihHAt4
: parm
, AmberParm7Reader::Ambertoppar
- DihHNum
: parm
, AmberParm7Reader::Ambertoppar
- DihNum
: parm
, AmberParm7Reader::Ambertoppar
- dim
: CrosstermValue
, CudaCrosstermValue
- dim2
: PmeGrid
- dim3
: PmeGrid
- dimension
: crossterm_params
- disableTopology
: SimParameters
- dispersion
: ComputeMsmMgr
- disposeForces()
: ParallelIOMgr
, CollectionMaster
- disposePositions()
: CollectionMaster
, ParallelIOMgr
- disposeVelocities()
: ParallelIOMgr
, CollectionMaster
- dist
: QMAtomData
, pntChrgDist
, ComputeQMPntChrg
, lssDistSort
- Dist()
: AVector
- distance
: bond_params
, lphost
- distAttExp
: SimParameters
- distop
: cr_sortop_reverse_priority
- distRepExp
: SimParameters
- distribute()
: MigrateAtomsCombinedMsg
- DistributeForce()
: ARestraint
- distributeHomePatches()
: WorkDistrib
- DistSqr()
: AVector
- dk
: GridforceLiteGrid
, GridforceFullBaseGrid
- dk_hi
: GridforceFullBaseGrid::GridIndices
- dk_lo
: GridforceFullBaseGrid::GridIndices
- dk_nopad
: GridforceFullBaseGrid
- do_calc()
: ComputeGridForce
- doAtomMigration()
: HomePatch
- doEnergy
: ComputeNonbondedMIC
, GBISParamStruct
, Flags
, PmeBlockMsg
, PmePencilXY
, ComputeNonbondedCUDA
, PmeAtomPencilMsg
, PmePencilXYZ
, PmeRunMsg
, PmePencilZ
, PmePencilY
, PmePencilX
, PmeAtomMsg
- doForce()
: ComputeNonbondedPair
, ComputeConsForce
, ComputeConsTorque
, ComputeGridForce
, ComputeNonbondedSelf
, ComputePatchPair
, ComputeSphericalBC
, ComputeEField
, ComputePatch
, ComputeStir
, ComputeRestraints
, ComputeLCPO
, ComputeHomePatch
, ComputeCylindricalBC
- doFullElectrostatics
: GBISParamStruct
, Flags
- doGBIS
: GBISParamStruct
, Flags
- doGroupSizeCheck()
: HomePatch
- doKineticEnergy
: Sequencer
- doLCPO
: Flags
- doLoadTuples
: ComputeHomeTuples< T, S, P >
- doLoweAndersen
: Flags
, nonbonded
- doMarginCheck()
: HomePatch
- doMolly
: Flags
- doMomenta
: Sequencer
- done()
: MsmProfiler
, MsmTimer
- done_reading_files()
: Parameters
- done_reading_structure()
: Parameters
- doneCompute()
: ComputeMsmMgr
- doneSaveComputeMap()
: WorkDistrib
- doneUpdateLocalComputes()
: ComputeMgr
- doneVirialContrib()
: ComputeMsmMgr
- doNonbonded
: Flags
- doPairlistCheck()
: HomePatch
- doQMWork()
: ComputePme
- doSlow
: ComputeNonbondedMIC
, GBISCoordMsg
, ComputeNonbondedCUDA
- doSmoothing
: GBISParamStruct
- dot()
: Vector
, AVector
- doVirial
: PmeBlockMsg
, PmePencilXYZ
, PmePencilZ
, Flags
, PmePencilXY
, PmePencilY
, PmePencilX
, PmeAtomPencilMsg
, PmeRunMsg
, PmeAtomMsg
- downstream()
: PatchMap
- downstreamNeighbors()
: PatchMap
- doWork()
: ComputeFullDirect
, ComputeGlobal
, ComputeHomePatch
, ComputePmeCUDA
, ComputeHomeTuples< T, S, P >
, ComputeMsm
, ComputeExt
, ComputeEwald
, ComputeSelfTuples< T, S, P >
, ComputePme
, Compute
, ComputeMoa
, ComputeNonbondedMIC
, ComputeNonbondedCUDA
, ComputePatchPair
, ComputeFmmSerial
, ComputeQM
, ComputeMsmSerial
, ComputePatch
, ComputeTclBC
, CudaComputeNonbonded
, ComputeLCPO
, ComputeGBISser
- drudeBondConst
: SimParameters
- drudeBondLen
: SimParameters
- drudeBondTemp
: Controller
- drudeBondTempAvg
: Controller
- drudeDamping
: SimParameters
- drudeHardWallOn
: SimParameters
- drudeNbthole
: ComputeNonbondedUtil
- drudeNbtholeCut
: SimParameters
- drudeOn
: SimParameters
- drudeTemp
: SimParameters
- dsq
: RattleParam
- dstpe
: ExchangeAtomsReqMsg
- dsum
: ClusterCoorMsg
, ClusterCoorElem
- dt
: SimParameters
, colvarproxy_namd
- dthetax
: gather_t< T, order >
- dthetay
: gather_t< T, order >
- dthetaz
: gather_t< T, order >
- dudx
: minpoint
- dummyData()
: dummyData
- dump_tables()
: HashPool< T >