SimParameters Member List

This is the complete list of members for SimParameters, including all inherited members.

aaAngleExp	SimParameters
amberOn	SimParameters
auxFilename	SimParameters
berendsenPressureCompressibility	SimParameters
berendsenPressureFreq	SimParameters
berendsenPressureOn	SimParameters
berendsenPressureRelaxationTime	SimParameters
berendsenPressureTarget	SimParameters
binaryOutput	SimParameters
binaryRestart	SimParameters
cellBasisVector1	SimParameters
cellBasisVector2	SimParameters
cellBasisVector3	SimParameters
cellOrigin	SimParameters
COLDOn	SimParameters
COLDRate	SimParameters
COLDTemp	SimParameters
colvarsOn	SimParameters
commOnly	SimParameters
comMove	SimParameters
consForceFile	SimParameters
consForceOn	SimParameters
consForceScaling	SimParameters
consTorqueAxisFile	SimParameters
consTorqueFile	SimParameters
consTorqueGlobVal	SimParameters
consTorqueOn	SimParameters
consTorquePivotFile	SimParameters
consTorqueValFile	SimParameters
constraintExp	SimParameters
constraintScaling	SimParameters
constraintsOn	SimParameters
constrXOn	SimParameters
constrYOn	SimParameters
constrZOn	SimParameters
cosAngles	SimParameters
cutoff	SimParameters
cylindricalBCAxis	SimParameters
cylindricalBCexp1	SimParameters
cylindricalBCexp2	SimParameters
cylindricalBCk1	SimParameters
cylindricalBCk2	SimParameters
cylindricalBCl1	SimParameters
cylindricalBCl2	SimParameters
cylindricalBCOn	SimParameters
cylindricalBCr1	SimParameters
cylindricalBCr2	SimParameters
cylindricalCenter	SimParameters
daCutoffDist	SimParameters
daOffDist	SimParameters
daOnDist	SimParameters
dcdFilename	SimParameters
dcdFrequency	SimParameters
dcdUnitCell	SimParameters
decouple	SimParameters
dhaCutoffAngle	SimParameters
dhaOffAngle	SimParameters
dhaOnAngle	SimParameters
dielectric	SimParameters
dihedralOn	SimParameters
distAttExp	SimParameters
distRepExp	SimParameters
drudeOn	SimParameters
drudeTemp	SimParameters
dt	SimParameters
dummy	SimParameters
eField	SimParameters
eFieldFreq	SimParameters
eFieldOn	SimParameters
eFieldPhase	SimParameters
exclude	SimParameters
excludeFromPressure	SimParameters
extCoordFilename	SimParameters
extForceFilename	SimParameters
extForcesCommand	SimParameters
extForcesOn	SimParameters
extraBondsOn	SimParameters
fepElecLambdaStart	SimParameters
fepEquilSteps	SimParameters
fepOn	SimParameters
fepOutFile	SimParameters
fepOutFreq	SimParameters
fepTemp	SimParameters
fepVdwLambdaEnd	SimParameters
fepVdwShiftCoeff	SimParameters
FFTWEstimate	SimParameters
FFTWUseWisdom	SimParameters
FFTWWisdomFile	SimParameters
FFTWWisdomString	SimParameters
firstLdbStep	SimParameters
firstTimestep	SimParameters
fixedAtomsForces	SimParameters
fixedAtomsOn	SimParameters
FMAFFTBlock	SimParameters
FMAFFTOn	SimParameters
FMALevels	SimParameters
FMAMp	SimParameters
FMAOn	SimParameters
fmaTheta	SimParameters
freeEnergyOn	SimParameters
fullDirectOn	SimParameters
fullElectFrequency	SimParameters
genCompressedPsf	SimParameters
globalForcesOn	SimParameters
globalOn	SimParameters
gridforceContA1	SimParameters
gridforceContA2	SimParameters
gridforceContA3	SimParameters
gridforceOn	SimParameters
gridforceScale	SimParameters
gridforceVOffset	SimParameters
gridforceVolts	SimParameters
gromacsOn	SimParameters
haAngleExp	SimParameters
hgroupCutoff	SimParameters
HydrogenBonds	SimParameters
IMDfreq	SimParameters
IMDignore	SimParameters
IMDon	SimParameters
IMDport	SimParameters
IMDwait	SimParameters
initialize_config_data(ConfigList *, char *&cwd)	SimParameters
initialTemp	SimParameters
isRecvProxySTAuto()	SimParameters	[inline]
isRecvProxySTEnabled()	SimParameters	[inline]
isSendProxySTAuto()	SimParameters	[inline]
isSendProxySTEnabled()	SimParameters	[inline]
lambda	SimParameters
lambda2	SimParameters
langevinDamping	SimParameters
langevinHydrogen	SimParameters
langevinOn	SimParameters
langevinPistonDecay	SimParameters
langevinPistonOn	SimParameters
langevinPistonPeriod	SimParameters
langevinPistonTarget	SimParameters
langevinPistonTemp	SimParameters
langevinTemp	SimParameters
lastLdbStep	SimParameters
lattice	SimParameters
ldbBackgroundScaling	SimParameters
ldbHomeBackgroundScaling	SimParameters
ldbPeriod	SimParameters
ldbPMEBackgroundScaling	SimParameters
ldbStrategy	SimParameters
ldbUnloadOne	SimParameters
ldbUnloadPME	SimParameters
ldbUnloadRank	SimParameters
ldbUnloadRankZero	SimParameters
ldbUnloadSMP	SimParameters
ldbUnloadZero	SimParameters
lesFactor	SimParameters
lesOn	SimParameters
lesReduceMass	SimParameters
lesReduceTemp	SimParameters
limitDist	SimParameters
longSplitting	SimParameters
margin	SimParameters
maxExclusionFlags	SimParameters
maximumMove	SimParameters
maxPairPart	SimParameters
maxSelfPart	SimParameters
mergeCrossterms	SimParameters
minAtomsPerPatch	SimParameters
minBabyStep	SimParameters
minimizeCGOn	SimParameters
minimizeOn	SimParameters
minLineGoal	SimParameters
minTinyStep	SimParameters
miscForcesOn	SimParameters
mollyIter	SimParameters
mollyOn	SimParameters
mollyTol	SimParameters
movDragFile	SimParameters
movDragGlobVel	SimParameters
movDragOn	SimParameters
movDragVelFile	SimParameters
movingConstraintsOn	SimParameters
movingConsVel	SimParameters
MTSAlgorithm	SimParameters
N	SimParameters
nonbondedFrequency	SimParameters
nonbondedScaling	SimParameters
noPatchesOnOne	SimParameters
noPatchesOnZero	SimParameters
numAtomsPair	SimParameters
numAtomsPair2	SimParameters
numAtomsSelf	SimParameters
numAtomsSelf2	SimParameters
outputEnergies	SimParameters
outputFilename	SimParameters
outputMomenta	SimParameters
outputPairlists	SimParameters
outputPatchDetails	SimParameters
outputPressure	SimParameters
outputTiming	SimParameters
pairInteractionGroup1	SimParameters
pairInteractionGroup2	SimParameters
pairInteractionOn	SimParameters
pairInteractionSelf	SimParameters
pairlistDist	SimParameters
pairlistGrow	SimParameters
pairlistMinProcs	SimParameters
pairlistShrink	SimParameters
pairlistsPerCycle	SimParameters
pairlistTrigger	SimParameters
paraTypeCharmmOn	SimParameters
paraTypeXplorOn	SimParameters
patchDimension	SimParameters
PMEBarrier	SimParameters
PMEEwaldCoefficient	SimParameters
PMEGridSizeX	SimParameters
PMEGridSizeY	SimParameters
PMEGridSizeZ	SimParameters
PMEGridSpacing	SimParameters
PMEInterpOrder	SimParameters
PMEMinPoints	SimParameters
PMEMinSlices	SimParameters
PMEOn	SimParameters
PMEPencils	SimParameters
PMEProcessors	SimParameters
PMETolerance	SimParameters
pressureProfileAtomTypes	SimParameters
pressureProfileEwaldOn	SimParameters
pressureProfileEwaldX	SimParameters
pressureProfileEwaldY	SimParameters
pressureProfileEwaldZ	SimParameters
pressureProfileFreq	SimParameters
pressureProfileOn	SimParameters
pressureProfileSlabs	SimParameters
procsPerNode	SimParameters
randomSeed	SimParameters
readExclusions	SimParameters
reassignFreq	SimParameters
reassignHold	SimParameters
reassignIncr	SimParameters
reassignTemp	SimParameters
receive_SimParameters(MIStream *)	SimParameters
rescaleFreq	SimParameters
rescaleTemp	SimParameters
restartFilename	SimParameters
restartFrequency	SimParameters
restartSave	SimParameters
rigidBonds	SimParameters
rigidDie	SimParameters
rigidIter	SimParameters
rigidTol	SimParameters
rotConsAxis	SimParameters
rotConsPivot	SimParameters
rotConstraintsOn	SimParameters
rotConsVel	SimParameters
rotDragAxisFile	SimParameters
rotDragFile	SimParameters
rotDragGlobVel	SimParameters
rotDragOn	SimParameters
rotDragPivotFile	SimParameters
rotDragVelFile	SimParameters
scale14	SimParameters
scriptArg1	SimParameters
scriptArg2	SimParameters
scriptArg3	SimParameters
scriptArg4	SimParameters
scriptArg5	SimParameters
scriptSet(const char *, const char *)	SimParameters
selectConstraintsOn	SimParameters
send_SimParameters(Communicate *)	SimParameters
shiftIOToOne	SimParameters
SimParameters()	SimParameters	[inline]
SimParameters(ConfigList *c, char *&cwd)	SimParameters	[inline]
SMDDir	SimParameters
SMDFile	SimParameters
SMDk	SimParameters
SMDk2	SimParameters
SMDOn	SimParameters
SMDOutputFreq	SimParameters
SMDVel	SimParameters
sphericalBCexp1	SimParameters
sphericalBCexp2	SimParameters
sphericalBCk1	SimParameters
sphericalBCk2	SimParameters
sphericalBCOn	SimParameters
sphericalBCr1	SimParameters
sphericalBCr2	SimParameters
sphericalCenter	SimParameters
splitPatch	SimParameters
stepsPerCycle	SimParameters
stirAxis	SimParameters
stirFilename	SimParameters
stirK	SimParameters
stirOn	SimParameters
stirPivot	SimParameters
stirStartingTheta	SimParameters
stirVel	SimParameters
strainRate	SimParameters
strainRate2	SimParameters
surfaceTensionTarget	SimParameters
switchingActive	SimParameters
switchingDist	SimParameters
tclBCArgs	SimParameters
tclBCOn	SimParameters
tclBCScript	SimParameters
tclForcesOn	SimParameters
tCoupleOn	SimParameters
tCoupleTemp	SimParameters
testOn	SimParameters
thermInt	SimParameters
tiElecLambdaStart	SimParameters
tiEquilSteps	SimParameters
tiLambda	SimParameters
tiOutFile	SimParameters
tiOutFreq	SimParameters
tiTemp	SimParameters
tiVdwLambdaEnd	SimParameters
tiVdwShiftCoeff	SimParameters
TMDFile	SimParameters
TMDFinalRMSD	SimParameters
TMDFirstStep	SimParameters
TMDInitialRMSD	SimParameters
TMDk	SimParameters
TMDLastStep	SimParameters
TMDOn	SimParameters
TMDOutputFreq	SimParameters
totalAtoms	SimParameters
twoAwayX	SimParameters
twoAwayY	SimParameters
twoAwayZ	SimParameters
useAntecedent	SimParameters
useCompressedPsf	SimParameters
useConstantArea	SimParameters
useConstantRatio	SimParameters
useDPME	SimParameters
useFlexibleCell	SimParameters
useGroupPressure	SimParameters
usePairlists	SimParameters
useSettle	SimParameters
vdwGeometricSigma	SimParameters
vdwscale14	SimParameters
velDcdFilename	SimParameters
velDcdFrequency	SimParameters
watmodel	SimParameters
wrapAll	SimParameters
wrapNearest	SimParameters
wrapWater	SimParameters
xstFilename	SimParameters
xstFrequency	SimParameters
zeroMomentum	SimParameters
zeroMomentumAlt	SimParameters
~SimParameters()	SimParameters	[inline]

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