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NAMD
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This is the complete list of members for Sequencer, including all inherited members.
| adaptTempT | Sequencer | protected |
| adaptTempUpdate(int) | Sequencer | protected |
| addForceToMomentum(BigReal, const int ftag=Results::normal, const int useSaved=0) | Sequencer | protected |
| addForceToMomentum3(const BigReal timestep1, const int ftag1, const int useSaved1, const BigReal timestep2, const int ftag2, const int useSaved2, const BigReal timestep3, const int ftag3, const int useSaved3) | Sequencer | protected |
| addForceToMomentum_SOA(const double scaling, double dt_normal, double dt_nbond, double dt_slow, int maxForceNumber) | Sequencer | protected |
| addMovDragToPosition(BigReal) | Sequencer | protected |
| addRotDragToPosition(BigReal) | Sequencer | protected |
| addVelocityToPosition(BigReal) | Sequencer | protected |
| addVelocityToPosition_SOA(const double dt) | Sequencer | protected |
| algorithm(void) | Sequencer | protectedvirtual |
| awaken(void) | Sequencer | inline |
| berendsenPressure(int) | Sequencer | protected |
| berendsenPressure_count | Sequencer | protected |
| berendsenPressure_SOA(int step) | Sequencer | protected |
| broadcast | Sequencer | protected |
| calcFixVirial(Tensor &fixVirialNormal, Tensor &fixVirialNbond, Tensor &fixVirialSlow, Vector &fixForceNormal, Vector &fixForceNbond, Vector &fixForceSlow) | Sequencer | protected |
| calcKineticEnergy() | Sequencer | protected |
| checkpoint_berendsenPressure_count | Sequencer | protected |
| clearDevicePatchMap() | Sequencer | protected |
| collection | Sequencer | protected |
| constructDevicePatchMap() | Sequencer | protected |
| correctMomentum(int step, BigReal drifttime) | Sequencer | protected |
| cycleBarrier(int, int) | Sequencer | protected |
| doKineticEnergy | Sequencer | protected |
| doMigrationGPU(const int startup, const int doGlobal, const int updatePatchMap) | Sequencer | protected |
| doMomenta | Sequencer | protected |
| hardWallDrude(BigReal, int) | Sequencer | protected |
| HomePatch class | Sequencer | friend |
| initialize_integrate_CUDA_SOA(int scriptTask, int step, BigReal timestep, int numberOfSteps, int nbondstep, int slowstep, int maxForceUsed) | Sequencer | protected |
| integrate(int) | Sequencer | protected |
| integrate_CUDA_SOA(int scriptTask) | Sequencer | protected |
| integrate_SOA(int) | Sequencer | protected |
| langevinPiston(int) | Sequencer | protected |
| langevinPiston_SOA(int step) | Sequencer | protected |
| langevinVelocities(BigReal) | Sequencer | protected |
| langevinVelocitiesBBK1(BigReal) | Sequencer | protected |
| langevinVelocitiesBBK1_SOA(BigReal timestep) | Sequencer | protected |
| langevinVelocitiesBBK2(BigReal) | Sequencer | protected |
| langevinVelocitiesBBK2_SOA(BigReal timestep) | Sequencer | protected |
| ldbSteps | Sequencer | protected |
| masterThread | Sequencer | protected |
| maximumMove(BigReal) | Sequencer | protected |
| maximumMove_SOA(const double dt, const double maxvel2) | Sequencer | protected |
| min_reduction | Sequencer | protected |
| minimizationQuenchVelocity(void) | Sequencer | protected |
| minimize() | Sequencer | protected |
| minimizeMoveDownhill(BigReal fmax2) | Sequencer | protected |
| monteCarloPressureControl(const int step, const int doMigration, const int doEnergy, const int doVirial, const int maxForceNumber, const int doGlobal) | Sequencer | protected |
| multigratorPressure(int step, int callNumber) | Sequencer | protected |
| multigratorReduction | Sequencer | protected |
| multigratorTemperature(int step, int callNumber) | Sequencer | protected |
| newMinimizeDirection(BigReal) | Sequencer | protected |
| newMinimizePosition(BigReal) | Sequencer | protected |
| newtonianVelocities(BigReal, const BigReal, const BigReal, const BigReal, const int, const int, const int) | Sequencer | protected |
| pairlistsAge | Sequencer | protected |
| pairlistsAgeLimit | Sequencer | protected |
| pairlistsAreValid | Sequencer | protected |
| patch | Sequencer | protected |
| pressureProfileReduction | Sequencer | protected |
| printDevicePatchMap() | Sequencer | protected |
| quenchVelocities() | Sequencer | protected |
| random | Sequencer | protected |
| rattle1(BigReal, int) | Sequencer | protected |
| rattle1_SOA(BigReal, int) | Sequencer | protected |
| reassignVelocities(BigReal, int) | Sequencer | protected |
| rebalanceLoad(int timestep) | Sequencer | protected |
| reduction | Sequencer | protected |
| reinitVelocities(void) | Sequencer | protected |
| reloadCharges() | Sequencer | protected |
| rescaleaccelMD(int, int, int) | Sequencer | protected |
| rescaleSoluteCharges(BigReal) | Sequencer | protected |
| rescaleVelocities(int) | Sequencer | protected |
| rescaleVelocities_numTemps | Sequencer | protected |
| rescaleVelocitiesByFactor(BigReal) | Sequencer | protected |
| run(void) | Sequencer | |
| runComputeObjects(int migration=1, int pairlists=0, int pressureStep=0) | Sequencer | protected |
| runComputeObjects_SOA(int migration, int pairlists, int step) | Sequencer | protected |
| runComputeObjectsCUDA(int doMigration, int doGlobal, int pairlists, int nstep, int startup) | Sequencer | protected |
| saveForce(const int ftag=Results::normal) | Sequencer | protected |
| scalePositionsVelocities(const Tensor &posScale, const Tensor &velScale) | Sequencer | protected |
| scaleVelocities(const BigReal velScale) | Sequencer | protected |
| Sequencer(HomePatch *p) | Sequencer | |
| SequencerCUDA class | Sequencer | friend |
| simParams | Sequencer | protected |
| slowFreq | Sequencer | protected |
| stochRescale_count | Sequencer | protected |
| stochRescaleVelocities(int) | Sequencer | protected |
| stochRescaleVelocities_SOA(int step) | Sequencer | protected |
| submitCollections(int step, int zeroVel=0) | Sequencer | protected |
| submitCollections_SOA(int step, int zeroVel=0) | Sequencer | protected |
| submitHalfstep(int) | Sequencer | protected |
| submitHalfstep_SOA() | Sequencer | protected |
| submitMinimizeReductions(int, BigReal fmax2) | Sequencer | protected |
| submitMomentum(int step) | Sequencer | protected |
| submitReductions(int) | Sequencer | protected |
| submitReductions_SOA() | Sequencer | protected |
| suspend(void) | Sequencer | |
| suspendULTs() | Sequencer | protected |
| tcoupleVelocities(BigReal, int) | Sequencer | protected |
| terminate(void) | Sequencer | protected |
| traceBarrier(int) | Sequencer | protected |
| updateDeviceData(const int startup, const int maxForceUsed, const int doGlobal) | Sequencer | protected |
| updateDevicePatchMap(int startup) | Sequencer | protected |
| wakeULTs() | Sequencer | protected |
| ~Sequencer(void) | Sequencer | virtual |
1.8.14