NAMD
ComputeNonbondedCUDA Member List

This is the complete list of members for ComputeNonbondedCUDA, including all inherited members.

A12_fComputeNonbondedUtilprivatestatic
A6_fComputeNonbondedUtilprivatestatic
accelMDOnComputeNonbondedUtilprivatestatic
activePatchesComputeNonbondedCUDA
alchDecoupleComputeNonbondedUtilprivatestatic
alchFepOnComputeNonbondedUtilprivatestatic
alchThermIntOnComputeNonbondedUtilprivatestatic
alchVdwShiftCoeffComputeNonbondedUtilprivatestatic
alchWCAOnComputeNonbondedUtilprivatestatic
assignPatches()ComputeNonbondedCUDA
atomMapComputeNonbondedCUDA
atomsComputeNonbondedCUDA
atoms_sizeComputeNonbondedCUDA
atomsChangedComputeNonbondedCUDA
atomUpdate()ComputeNonbondedCUDAvirtual
B12_fComputeNonbondedUtilprivatestatic
B6_fComputeNonbondedUtilprivatestatic
basePriorityComputeprotected
build_exclusions()ComputeNonbondedCUDAstatic
build_force_table()ComputeNonbondedCUDAstatic
build_lj_table()ComputeNonbondedCUDAstatic
c0ComputeNonbondedUtilprivatestatic
c1ComputeNonbondedUtilprivatestatic
C12_fComputeNonbondedUtilprivatestatic
c3ComputeNonbondedUtilprivatestatic
c5ComputeNonbondedUtilprivatestatic
c6ComputeNonbondedUtilprivatestatic
C6_fComputeNonbondedUtilprivatestatic
c7ComputeNonbondedUtilprivatestatic
c8ComputeNonbondedUtilprivatestatic
calc_error(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fep(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fullelect_fep(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fullelect_int(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_int(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_merge_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_merge_fullelect_fep(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_merge_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_merge_fullelect_int(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_merge_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_slow_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_slow_fullelect_fep(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_slow_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_slow_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_energy_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_merge_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_merge_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_merge_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_slow_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_slow_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_slow_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_pair_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fep(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fullelect_fep(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fullelect_int(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_int(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_merge_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_merge_fullelect_fep(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_merge_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_merge_fullelect_int(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_merge_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_slow_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_slow_fullelect_fep(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_slow_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_slow_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_energy_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_merge_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_merge_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_merge_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_merge_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_merge_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_merge_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_slow_fullelect(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_slow_fullelect_go(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_slow_fullelect_les(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_slow_fullelect_pprof(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_slow_fullelect_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_slow_fullelect_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_tabener(nonbonded *)ComputeNonbondedUtilprivatestatic
calc_self_ti(nonbonded *)ComputeNonbondedUtilprivatestatic
calcFullPairComputeNonbondedUtilprivatestatic
calcFullPairEnergyComputeNonbondedUtilprivatestatic
calcFullSelfComputeNonbondedUtilprivatestatic
calcFullSelfEnergyComputeNonbondedUtilprivatestatic
calcGBIS(nonbonded *params, GBISParamStruct *gbisParams)ComputeNonbondedUtilprivate
calcMergePairComputeNonbondedUtilprivatestatic
calcMergePairEnergyComputeNonbondedUtilprivatestatic
calcMergeSelfComputeNonbondedUtilprivatestatic
calcMergeSelfEnergyComputeNonbondedUtilprivatestatic
calcPairComputeNonbondedUtilprivatestatic
calcPairEnergyComputeNonbondedUtilprivatestatic
calcSelfComputeNonbondedUtilprivatestatic
calcSelfEnergyComputeNonbondedUtilprivatestatic
calcSlowPairComputeNonbondedUtilprivatestatic
calcSlowPairEnergyComputeNonbondedUtilprivatestatic
calcSlowSelfComputeNonbondedUtilprivatestatic
calcSlowSelfEnergyComputeNonbondedUtilprivatestatic
cidCompute
columnsizeComputeNonbondedUtilprivatestatic
commOnlyComputeNonbondedUtilprivatestatic
Compute(ComputeID)Compute
ComputeNonbondedCUDA(ComputeID c, ComputeMgr *mgr, ComputeNonbondedCUDA *m=0, int idx=-1)ComputeNonbondedCUDA
ComputeNonbondedUtil()ComputeNonbondedUtilinlineprivate
computeRecordsComputeNonbondedCUDA
computesChangedComputeNonbondedCUDA
computeTypeComputeprotected
corr_tableComputeNonbondedUtilprivatestatic
cutoffComputeNonbondedUtilprivatestatic
cutoff2ComputeNonbondedUtilprivatestatic
cutoff2_fComputeNonbondedUtilprivatestatic
cutoff_3ComputeNonbondedUtilprivatestatic
cutoff_3_fComputeNonbondedUtilprivatestatic
cutoff_6ComputeNonbondedUtilprivatestatic
cutoff_6_fComputeNonbondedUtilprivatestatic
dEdaSumHComputeNonbondedCUDA
dEdaSumH_sizeComputeNonbondedCUDA
deviceIDComputeNonbondedCUDA
dielectric_1ComputeNonbondedUtilprivatestatic
doEnergyComputeNonbondedCUDA
doSlowComputeNonbondedCUDA
doWork()ComputeNonbondedCUDAvirtual
drudeNbtholeComputeNonbondedUtilprivatestatic
electEnergyIndex enum valueComputeNonbondedUtilprivate
electEnergyIndex_s enum valueComputeNonbondedUtilprivate
electEnergyIndex_ti_1 enum valueComputeNonbondedUtilprivate
electEnergyIndex_ti_2 enum valueComputeNonbondedUtilprivate
enqueueWork()Computeprotected
ewaldcofComputeNonbondedUtilprivatestatic
exclChecksumIndex enum valueComputeNonbondedUtilprivate
fast_tableComputeNonbondedUtilprivatestatic
finishPatch(int)ComputeNonbondedCUDAvirtual
finishReductions()ComputeNonbondedCUDA
finishWork()ComputeNonbondedCUDA
fixedAtomsOnComputeNonbondedUtilprivatestatic
forcesComputeNonbondedCUDA
forces_sizeComputeNonbondedCUDA
full_tableComputeNonbondedUtilprivatestatic
fullElectEnergyIndex enum valueComputeNonbondedUtilprivate
fullElectEnergyIndex_s enum valueComputeNonbondedUtilprivate
fullElectEnergyIndex_ti_1 enum valueComputeNonbondedUtilprivate
fullElectEnergyIndex_ti_2 enum valueComputeNonbondedUtilprivate
gbisP2PatchReady(PatchID, int seq)Computevirtual
gbisP3PatchReady(PatchID, int seq)Computevirtual
gbisPhaseComputeprotected
gbisPhasePriorityComputeprotected
getGBISPhase(void)Computeinline
getNumPatches()Computeinline
goForcesOnComputeNonbondedUtilprivatestatic
goGroPairComputeNonbondedUtilprivatestatic
goMethodComputeNonbondedUtilprivatestatic
goNativeEnergyIndex enum valueComputeNonbondedUtilprivate
goNonnativeEnergyIndex enum valueComputeNonbondedUtilprivate
groGaussEnergyIndex enum valueComputeNonbondedUtilprivate
groLJEnergyIndex enum valueComputeNonbondedUtilprivate
hostedPatchesComputeNonbondedCUDA
initialize()Computeinlinevirtual
k_vdwaComputeNonbondedUtilprivatestatic
k_vdwa_fComputeNonbondedUtilprivatestatic
k_vdwbComputeNonbondedUtilprivatestatic
k_vdwb_fComputeNonbondedUtilprivatestatic
lambda_tableComputeNonbondedUtilprivatestatic
latticeComputeNonbondedCUDA
ldObjHandleCompute
lesFactorComputeNonbondedUtilprivatestatic
lesOnComputeNonbondedUtilprivatestatic
lesScalingComputeNonbondedUtilprivatestatic
ljTableComputeNonbondedUtilprivatestatic
localActivePatchesComputeNonbondedCUDA
localComputeRecordsComputeNonbondedCUDA
localHostedPatchesComputeNonbondedCUDA
localWorkMsgCompute
localWorkMsg2ComputeNonbondedCUDA
masterComputeNonbondedCUDA
masterPeComputeNonbondedCUDA
messageFinishPatch(int)ComputeNonbondedCUDA
molComputeNonbondedUtilprivatestatic
noWork()ComputeNonbondedCUDAvirtual
numSlavesComputeNonbondedCUDA
pairInteractionOnComputeNonbondedUtilprivatestatic
pairInteractionSelfComputeNonbondedUtilprivatestatic
pairlistsValidComputeNonbondedCUDA
pairlistToleranceComputeNonbondedCUDA
pairlistWarningIndex enum valueComputeNonbondedUtilprivate
patchMapComputeNonbondedCUDA
patchPairsReorderedComputeNonbondedCUDA
patchReady(PatchID, int doneMigration, int seq)Computevirtual
patchRecordsComputeNonbondedCUDA
pi_ewaldcofComputeNonbondedUtilprivatestatic
plcutoff2ComputeNonbondedCUDA
pressureProfileAtomTypesComputeNonbondedUtilprivatestatic
pressureProfileMinComputeNonbondedUtilprivatestatic
pressureProfileOnComputeNonbondedUtilprivatestatic
pressureProfileSlabsComputeNonbondedUtilprivatestatic
pressureProfileThicknessComputeNonbondedUtilprivatestatic
priority(void)Computeinline
psiSumHComputeNonbondedCUDA
psiSumH_sizeComputeNonbondedCUDA
qmForcesOnComputeNonbondedUtilprivatestatic
r2_deltaComputeNonbondedUtilprivatestatic
r2_delta_1ComputeNonbondedUtilprivatestatic
r2_delta_expComputeNonbondedUtilprivatestatic
r2_tableComputeNonbondedUtilprivatestatic
recvYieldDevice(int pe)ComputeNonbondedCUDA
reductionComputeNonbondedCUDA
reductionDataSize enum valueComputeNonbondedUtilprivate
registerPatches()ComputeNonbondedCUDA
remoteActivePatchesComputeNonbondedCUDA
remoteComputeRecordsComputeNonbondedCUDA
remoteHostedPatchesComputeNonbondedCUDA
requirePatch(int pid)ComputeNonbondedCUDA
rowsizeComputeNonbondedUtilprivatestatic
savePairlistsComputeNonbondedCUDA
scale14ComputeNonbondedUtilprivatestatic
scalingComputeNonbondedUtilprivatestatic
scor_tableComputeNonbondedUtilprivatestatic
select(void)ComputeNonbondedUtilprivatestatic
sequence(void)Computeinline
setNumPatches(int n)Computeinline
skip()ComputeNonbondedCUDA
slaveIndexComputeNonbondedCUDA
slavePesComputeNonbondedCUDA
slavesComputeNonbondedCUDA
slow_forcesComputeNonbondedCUDA
slow_forces_sizeComputeNonbondedCUDA
slow_tableComputeNonbondedUtilprivatestatic
square(const BigReal &x, const BigReal &y, const BigReal &z)ComputeNonbondedUtilinlineprivatestatic
stepComputeNonbondedCUDA
submitPressureProfileData(BigReal *, SubmitReduction *)ComputeNonbondedUtilprivatestatic
submitReductionData(BigReal *, SubmitReduction *)ComputeNonbondedUtilprivatestatic
switchOnComputeNonbondedUtilprivatestatic
switchOn2ComputeNonbondedUtilprivatestatic
switchOn_1ComputeNonbondedUtilprivatestatic
switchOn_fComputeNonbondedUtilprivatestatic
table_allocComputeNonbondedUtilprivatestatic
table_enerComputeNonbondedUtilprivatestatic
table_lengthComputeNonbondedUtilprivatestatic
table_noshortComputeNonbondedUtilprivatestatic
table_shortComputeNonbondedUtilprivatestatic
TENSOR enum valueComputeNonbondedUtilprivate
type()Computeinline
usePairlistsComputeNonbondedCUDA
v_vdwaComputeNonbondedUtilprivatestatic
v_vdwa_fComputeNonbondedUtilprivatestatic
v_vdwbComputeNonbondedUtilprivatestatic
v_vdwb_fComputeNonbondedUtilprivatestatic
vdw_switch_modeComputeNonbondedUtilprivatestatic
vdwa_tableComputeNonbondedUtilprivatestatic
vdwb_tableComputeNonbondedUtilprivatestatic
vdwEnergyIndex enum valueComputeNonbondedUtilprivate
vdwEnergyIndex_s enum valueComputeNonbondedUtilprivate
vdwEnergyIndex_ti_1 enum valueComputeNonbondedUtilprivate
vdwEnergyIndex_ti_2 enum valueComputeNonbondedUtilprivate
vdwForceSwitchingComputeNonbondedUtilprivatestatic
VECTOR enum valueComputeNonbondedUtilprivate
workStartedComputeNonbondedCUDA
~Compute()Computevirtual
~ComputeNonbondedCUDA()ComputeNonbondedCUDA
~ComputeNonbondedUtil()ComputeNonbondedUtilinlineprivate