| version 1.4 | version 1.5 |
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| \begin{cvnamd} | |
| | |
| % compiling the NAMD User's Guide | % compiling the NAMD User's Guide |
| | |
| % define missing macros | % define missing macros |
| |
| % use the NAMD UG macros to document keywords | % use the NAMD UG macros to document keywords |
| \newcommand{\key}[5]{\NAMDCOLVARCONF{#1}{#2}{#3}{#4}{#5}} | \newcommand{\key}[5]{\NAMDCOLVARCONF{#1}{#2}{#3}{#4}{#5}} |
| \newcommand{\keydef}[6]{\NAMDCOLVARCONFWDEF{#1}{#2}{#3}{#4}{#5}{#6}} | \newcommand{\keydef}[6]{\NAMDCOLVARCONFWDEF{#1}{#2}{#3}{#4}{#5}{#6}} |
| | \newcommand{\labelkey}[1]{} |
| | \newcommand{\refkey}[2]{\texttt{#1} (see \ref{#2})} |
| | \newcommand{\dupkey}[4]{% |
| | \index{#2!\texttt{#1}} |
| | {\bf \large \tt #1:} see definition of \texttt{#1} in sec.~\ref{#3} (#4)% |
| | } |
| | \newcommand{\simkey}[3]{% |
| | \index{#2!\texttt{#1}} |
| | {\bf \large \tt #1:} analogous to \texttt{#3}% |
| | } |
| | |
| \newcommand{\cvsec}[1]{\subsection{#1}} | \newcommand{\cvsec}[1]{\subsection{#1}} |
| \newcommand{\cvsubsec}[1]{\subsubsection{#1}} | \newcommand{\cvsubsec}[1]{\subsubsection{#1}} |
| \newcommand{\cvsubsubsec}[1]{\paragraph*{#1}} | \newcommand{\cvsubsubsec}[1]{\paragraph*{#1}} |
| | |
| \end{cvnamd} | |
| | |
| \begin{cvrefman} | |
| | |
| % compiling the standalone reference manual | |
| | |
| % use macros with context field to document keywords | |
| \newcommand{\key}[5]{% | |
| \index{\texttt{#1}} | |
| {\bf \large \tt #1 } $\langle\,$#3$\,\rangle$ \\% | |
| {\bf Context: } #2 \\% | |
| {\bf Acceptable values: } #4 \\% | |
| {\bf Description: } #5% | |
| } | |
| \newcommand{\keydef}[6]{% | |
| \index{\texttt{#1}} | |
| {\bf \large \tt #1 } $\langle\,$#3$\,\rangle$ \\% | |
| {\bf Context: } #2 \\% | |
| {\bf Acceptable values: } #4 \\% | |
| {\bf Default value: } #5 \\% | |
| {\bf Description: } #6% | |
| } | |
| \newcommand{\gradx}{\mbox{\boldmath$\nabla_{\!\!x}\,$}} | |
| \newcommand{\vx}{{\mbox{\boldmath{$x$}}}} | |
| \newcommand{\bm}[1]{{\mbox{\boldmath{$#1$}}}} | |
| | |
| \newcommand{\cvsec}[1]{\section{#1}} | |
| \newcommand{\cvsubsec}[1]{\subsection{#1}} | |
| \newcommand{\cvsubsubsec}[1]{\subsubsection{#1}} | |
| | |
| \end{cvrefman} | |
| | |
| \begin{cvnamd} | |
| \newcommand{\outputName}{\emph{outputName}} | \newcommand{\outputName}{\emph{outputName}} |
| \newcommand{\restartName}{\emph{restartName}} | \newcommand{\restartName}{\emph{restartName}} |
| \newcommand{\inputName}{\emph{inputName}} | \newcommand{\inputName}{\emph{inputName}} |
| \end{cvnamd} | |
| | |
| \begin{cvlammps} | |
| \newcommand{\outputName}{\emph{output}} | |
| \newcommand{\restartName}{\emph{restart}} | |
| \newcommand{\inputName}{\emph{input}} | |
| \end{cvlammps} | |
| | |