| Alg7.h |
| AlgNbor.C |
| AlgNbor.h |
| AlgRecBisection.C |
| AlgRecBisection.h |
| Array.h |
| AtomMap.C |
| AtomMap.h |
| AtomsDisInfo.C |
| AtomsDisInfo.ci |
| AtomsDisInfo.h |
| BOCgroup.h |
| BackEnd.C |
| BackEnd.h |
| Box.h |
| BroadcastClient.C |
| BroadcastClient.h |
| BroadcastMgr.C |
| BroadcastMgr.ci |
| BroadcastMgr.h |
| BroadcastObject.h |
| Broadcasts.h |
| CollectionMaster.C |
| CollectionMaster.ci |
| CollectionMaster.h |
| CollectionMgr.C |
| CollectionMgr.ci |
| CollectionMgr.h |
| Communicate.C |
| Communicate.h |
| ComputeAngles.h |
| ComputeBonds.h |
| ComputeConsForce.C |
| ComputeConsForce.h |
| ComputeConsForceMsgs.C |
| ComputeConsForceMsgs.h |
| ComputeCylindricalBC.C |
| ComputeCylindricalBC.h |
| ComputeDPME.C |
| ComputeDPME.h |
| ComputeDPMEMsgs.C |
| ComputeDPMEMsgs.h |
| ComputeDPMTA.C |
| ComputeDPMTA.h |
| ComputeDihedrals.C |
| ComputeDihedrals.h |
| ComputeEField.C |
| ComputeEField.h |
| ComputeEwald.C |
| ComputeEwald.h |
| ComputeExt.C |
| ComputeExt.h |
| ComputeExtMgr.ci |
| ComputeFullDirect.C |
| ComputeFullDirect.h |
| ComputeFullDirectBase.h |
| ComputeGlobal.C |
| ComputeGlobal.h |
| ComputeGlobalMsgs.C |
| ComputeGlobalMsgs.h |
| ComputeGridForce.h |
| ComputeMgr.ci |
| ComputeMgr.h |
| ComputeNonbondedInl.h |
| ComputeNonbondedLES.C |
| ComputeNonbondedPProf.C |
| ComputeNonbondedSplitting.h |
| ComputeRestraints.C |
| ComputeRestraints.h |
| ComputeSphericalBC.C |
| ComputeSphericalBC.h |
| ComputeStir.C |
| ComputeStir.h |
| ConfigList.C |
| ConfigList.h |
| DataStream.C |
| DataStream.h |
| DumpBench.C |
| DumpBench.h |
| FreeEnergyAssert.h |
| FreeEnergyEnums.h |
| FreeEnergyGroup.C |
| FreeEnergyGroup.h |
| FreeEnergyLambdMgr.C |
| FreeEnergyLambdMgr.h |
| FreeEnergyLambda.C |
| FreeEnergyLambda.h |
| FreeEnergyMain.C |
| FreeEnergyParse.C |
| FreeEnergyParse.h |
| FreeEnergyRMgr.C |
| FreeEnergyRMgr.h |
| FreeEnergyRestrain.C |
| FreeEnergyRestrain.h |
| FreeEnergyVector.C |
| FreeEnergyVector.h |
| GlobalMaster.C |
| GlobalMaster.h |
| GlobalMasterEasy.C |
| GlobalMasterEasy.h |
| GlobalMasterFreeEnergy.h |
| GlobalMasterIMD.h |
| GlobalMasterMisc.C |
| GlobalMasterMisc.h |
| GlobalMasterServer.h |
| GlobalMasterTest.C |
| GlobalMasterTest.h |
| GromacsTopFile.h |
| HomePatchList.h |
| HomePatchTypes.h |
| Hydrogen.h |
| IMDOutput.C |
| IMDOutput.h |
| InfoStream.C |
| InfoStream.h |
| LJTable.C |
| LJTable.h |
| LdbCoordinator.ci |
| MStream.h |
| MathArray.h |
| Measure.C |
| MigrateAtomsMsg.C |
| MigrateAtomsMsg.h |
| Migration.h |
| NamdCentLB.ci |
| NamdNborLB.C |
| NamdNborLB.ci |
| NamdNborLB.h |
| NamdOneTools.C |
| NamdOneTools.h |
| NamdState.h |
| Node.ci |
| Node.h |
| ObjectArena.h |
| Output.C |
| Output.h |
| OwnerBox.h |
| PDB.C |
| PDB.h |
| PDBData.C |
| PDBData.h |
| Parameters.C |
| Parameters.h |
| ParseOptions.C |
| ParseOptions.h |
| PatchMap.inl |
| PatchMgr.C |
| PatchMgr.ci |
| PatchTypes.h |
| PmeBase.C |
| PmeBase.h |
| PmeKSpace.C |
| PmeKSpace.h |
| PmeRealSpace.C |
| PmeRealSpace.h |
| PressureProfile.h |
| Random.h |
| RecBisection.h |
| ReductionMgr.ci |
| RefineOnly.h |
| ResizeArray.h |
| ResizeArrayIter.h |
| ResizeArrayPrimIter.h |
| ResizeArrayRaw.h |
| Set.C |
| Set.h |
| SortableResizeArray.h |
| SortedArray.h |
| Sync.ci |
| Sync.h |
| Tensor.h |
| Thread.h |
| UniqueSetIter.h |
| UniqueSetRaw.h |
| UniqueSortedArray.h |
| Vector.h |
| WorkDistrib.ci |
| alanin |
| alanin.params |
| alanin.pdb |
| alanin.psf |
| ccsinterface.C |
| ccsinterface.h |
| common.C |
| dc.pl |
| dumpdcd.c |
| erf.C |
| fitrms.C |
| fitrms.h |
| fixdcd.c |
| flipbinpdb.c |
| flipdcd.c |
| heap.C |
| heap.h |
| imd.C |
| imd.h |
| largefiles.h |
| loaddcd.c |
| main.C |
| main.h |
| mainfunc.C |
| memusage.C |
| memusage.h |
| moduleinit.C |
| packmsg.h |
| parm.C |
| parm.h |
| pub3dfft.h |
| strlib.C |
| strlib.h |
| varsizemsg.h |
| vmdsock.h |