| version 1.198 | version 1.199 |
|---|
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| | src/ProxyMgr.h \ |
| | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| src/Molecule.h \ | src/Molecule.h \ |
| src/parm.h \ | src/parm.h \ |
| src/ConfigList.h \ | src/ConfigList.h \ |
| |
| plugins/include/vmdplugin.h \ | plugins/include/vmdplugin.h \ |
| src/Parameters.h \ | src/Parameters.h \ |
| src/ReductionMgr.h \ | src/ReductionMgr.h \ |
| src/UniqueSetIter.h \ | |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| | src/ProxyMgr.h \ |
| | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| src/Molecule.h \ | src/Molecule.h \ |
| src/parm.h \ | src/parm.h \ |
| src/ConfigList.h \ | src/ConfigList.h \ |
| |
| plugins/include/vmdplugin.h \ | plugins/include/vmdplugin.h \ |
| src/Parameters.h \ | src/Parameters.h \ |
| src/ReductionMgr.h \ | src/ReductionMgr.h \ |
| src/UniqueSetIter.h \ | |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| src/Parameters.h \ | src/ProxyMgr.h \ |
| src/UniqueSetIter.h \ | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| | src/Parameters.h \ |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/PressureProfile.h \ | src/PressureProfile.h \ |
| src/Debug.h | src/Debug.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputeBonds.o $(COPTC) src/ComputeBonds.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputeBonds.o $(COPTC) src/ComputeBonds.C |
| | obj/ComputeBondedCUDA.o: \ |
| | obj/.exists \ |
| | src/ComputeBondedCUDA.C \ |
| | src/NamdTypes.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/ComputeMgr.h \ |
| | src/main.h \ |
| | src/BOCgroup.h \ |
| | src/GlobalMaster.h \ |
| | src/GlobalMasterServer.h \ |
| | src/Lattice.h \ |
| | src/Tensor.h \ |
| | inc/ComputeMgr.decl.h \ |
| | src/WorkDistrib.h \ |
| | src/ComputeMap.h \ |
| | src/ProcessorPrivate.h \ |
| | inc/WorkDistrib.decl.h \ |
| | src/ProxyMgr.h \ |
| | src/PatchTypes.h \ |
| | src/UniqueSet.h \ |
| | src/UniqueSetRaw.h \ |
| | src/UniqueSetIter.h \ |
| | src/InfoStream.h \ |
| | inc/ProxyMgr.decl.h \ |
| | src/CudaUtils.h \ |
| | src/ComputeBonds.h \ |
| | src/Molecule.h \ |
| | src/parm.h \ |
| | src/structures.h \ |
| | src/ConfigList.h \ |
| | src/Hydrogen.h \ |
| | src/SortableResizeArray.h \ |
| | src/GromacsTopFile.h \ |
| | src/GridForceGrid.h \ |
| | src/SimParameters.h \ |
| | src/MGridforceParams.h \ |
| | src/strlib.h \ |
| | src/MStream.h \ |
| | plugins/include/molfile_plugin.h \ |
| | plugins/include/vmdplugin.h \ |
| | src/ReductionMgr.h \ |
| | src/ComputeHomeTuples.h \ |
| | src/Compute.h \ |
| | src/HomePatch.h \ |
| | src/Patch.h \ |
| | src/OwnerBox.h \ |
| | src/Box.h \ |
| | src/UniqueSortedArray.h \ |
| | src/SortedArray.h \ |
| | src/PatchMap.h \ |
| | src/HomePatchList.h \ |
| | src/ResizeArrayIter.h \ |
| | src/MigrateAtomsMsg.h \ |
| | src/Migration.h \ |
| | inc/PatchMgr.decl.h \ |
| | src/Settle.h \ |
| | src/Node.h \ |
| | inc/Node.decl.h \ |
| | src/PatchMap.inl \ |
| | src/AtomMap.h \ |
| | src/PatchMgr.h \ |
| | src/Parameters.h \ |
| | src/Priorities.h \ |
| | src/LdbCoordinator.h \ |
| | inc/LdbCoordinator.decl.h \ |
| | inc/NamdCentLB.decl.h \ |
| | inc/NamdNborLB.decl.h \ |
| | inc/NamdHybridLB.decl.h \ |
| | inc/NamdDummyLB.decl.h \ |
| | src/ComputeSelfTuples.h \ |
| | src/ComputeBonds.inl \ |
| | src/ComputeAngles.h \ |
| | src/ComputeAngles.inl \ |
| | src/ComputeDihedrals.h \ |
| | src/ComputeDihedrals.inl \ |
| | src/ComputeImpropers.h \ |
| | src/ComputeCrossterms.h \ |
| | src/ComputeNonbondedCUDAExcl.h \ |
| | src/ComputeNonbondedUtil.h \ |
| | src/ComputeNonbondedCUDAExcl.inl \ |
| | src/ComputeBondedCUDA.h \ |
| | src/CudaNonbondedTables.h \ |
| | src/ComputeBondedCUDAKernel.h \ |
| | src/TupleTypesCUDA.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputeBondedCUDA.o $(COPTC) src/ComputeBondedCUDA.C |
| obj/ComputeConsForce.o: \ | obj/ComputeConsForce.o: \ |
| obj/.exists \ | obj/.exists \ |
| src/ComputeConsForce.C \ | src/ComputeConsForce.C \ |
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| | src/ProxyMgr.h \ |
| | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| src/Molecule.h \ | src/Molecule.h \ |
| src/parm.h \ | src/parm.h \ |
| src/ConfigList.h \ | src/ConfigList.h \ |
| |
| plugins/include/vmdplugin.h \ | plugins/include/vmdplugin.h \ |
| src/Parameters.h \ | src/Parameters.h \ |
| src/ReductionMgr.h \ | src/ReductionMgr.h \ |
| src/UniqueSetIter.h \ | |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/ComputeCUDAMgr.h \ | src/ComputeCUDAMgr.h \ |
| src/CudaUtils.h \ | src/CudaUtils.h \ |
| inc/ComputeCUDAMgr.decl.h \ | inc/ComputeCUDAMgr.decl.h \ |
| | src/CudaNonbondedTables.h \ |
| src/CudaComputeNonbonded.h \ | src/CudaComputeNonbonded.h \ |
| src/Compute.h \ | src/Compute.h \ |
| src/Box.h \ | src/Box.h \ |
| |
| src/GlobalMaster.h \ | src/GlobalMaster.h \ |
| src/GlobalMasterServer.h \ | src/GlobalMasterServer.h \ |
| inc/ComputeMgr.decl.h \ | inc/ComputeMgr.decl.h \ |
| | src/ComputeBondedCUDA.h \ |
| | src/ComputeMap.h \ |
| | src/ComputeBondedCUDAKernel.h \ |
| | src/TupleTypesCUDA.h \ |
| | src/ComputeHomeTuples.h \ |
| | src/HomePatch.h \ |
| | src/Patch.h \ |
| | src/UniqueSortedArray.h \ |
| | src/SortedArray.h \ |
| | src/PatchMap.h \ |
| | src/HomePatchList.h \ |
| | src/ResizeArrayIter.h \ |
| | src/MigrateAtomsMsg.h \ |
| | src/Migration.h \ |
| | inc/PatchMgr.decl.h \ |
| | src/Settle.h \ |
| | src/PatchMap.inl \ |
| | src/AtomMap.h \ |
| | src/PatchMgr.h \ |
| | src/ProxyMgr.h \ |
| | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| | src/Parameters.h \ |
| | src/Priorities.h \ |
| | src/LdbCoordinator.h \ |
| | inc/LdbCoordinator.decl.h \ |
| | inc/NamdCentLB.decl.h \ |
| | inc/NamdNborLB.decl.h \ |
| | inc/NamdHybridLB.decl.h \ |
| | inc/NamdDummyLB.decl.h \ |
| src/DeviceCUDA.h \ | src/DeviceCUDA.h \ |
| inc/ComputeCUDAMgr.def.h | inc/ComputeCUDAMgr.def.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputeCUDAMgr.o $(COPTC) src/ComputeCUDAMgr.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputeCUDAMgr.o $(COPTC) src/ComputeCUDAMgr.C |
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| | src/ProxyMgr.h \ |
| | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| src/Molecule.h \ | src/Molecule.h \ |
| src/parm.h \ | src/parm.h \ |
| src/ConfigList.h \ | src/ConfigList.h \ |
| |
| plugins/include/vmdplugin.h \ | plugins/include/vmdplugin.h \ |
| src/Parameters.h \ | src/Parameters.h \ |
| src/ReductionMgr.h \ | src/ReductionMgr.h \ |
| src/UniqueSetIter.h \ | |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| src/Parameters.h \ | src/ProxyMgr.h \ |
| src/UniqueSetIter.h \ | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| | src/Parameters.h \ |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| | src/ProxyMgr.h \ |
| | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| src/Molecule.h \ | src/Molecule.h \ |
| src/parm.h \ | src/parm.h \ |
| src/ConfigList.h \ | src/ConfigList.h \ |
| |
| plugins/include/vmdplugin.h \ | plugins/include/vmdplugin.h \ |
| src/Parameters.h \ | src/Parameters.h \ |
| src/ReductionMgr.h \ | src/ReductionMgr.h \ |
| src/UniqueSetIter.h \ | |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/ComputeCUDAMgr.h \ | src/ComputeCUDAMgr.h \ |
| src/CudaUtils.h \ | src/CudaUtils.h \ |
| inc/ComputeCUDAMgr.decl.h \ | inc/ComputeCUDAMgr.decl.h \ |
| | src/CudaNonbondedTables.h \ |
| src/CudaComputeNonbonded.h \ | src/CudaComputeNonbonded.h \ |
| src/CudaTileListKernel.h \ | src/CudaTileListKernel.h \ |
| src/CudaComputeNonbondedKernel.h \ | src/CudaComputeNonbondedKernel.h \ |
| src/CudaComputeGBISKernel.h \ | src/CudaComputeGBISKernel.h \ |
| | src/ComputeBondedCUDA.h \ |
| | src/ComputeBondedCUDAKernel.h \ |
| | src/TupleTypesCUDA.h \ |
| src/ComputePmeCUDAMgr.h \ | src/ComputePmeCUDAMgr.h \ |
| src/PmeSolver.h \ | src/PmeSolver.h \ |
| src/PmeSolverUtil.h \ | src/PmeSolverUtil.h \ |
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| src/Parameters.h \ | src/ProxyMgr.h \ |
| src/UniqueSetIter.h \ | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| | src/Parameters.h \ |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/PatchMap.inl \ | src/PatchMap.inl \ |
| src/AtomMap.h \ | src/AtomMap.h \ |
| src/PatchMgr.h \ | src/PatchMgr.h \ |
| | src/ProxyMgr.h \ |
| | src/UniqueSetIter.h \ |
| | inc/ProxyMgr.decl.h \ |
| src/Molecule.h \ | src/Molecule.h \ |
| src/parm.h \ | src/parm.h \ |
| src/ConfigList.h \ | src/ConfigList.h \ |
| |
| plugins/include/vmdplugin.h \ | plugins/include/vmdplugin.h \ |
| src/Parameters.h \ | src/Parameters.h \ |
| src/ReductionMgr.h \ | src/ReductionMgr.h \ |
| src/UniqueSetIter.h \ | |
| src/Priorities.h \ | src/Priorities.h \ |
| src/LdbCoordinator.h \ | src/LdbCoordinator.h \ |
| inc/LdbCoordinator.decl.h \ | inc/LdbCoordinator.decl.h \ |
| |
| src/MStream.h \ | src/MStream.h \ |
| plugins/include/molfile_plugin.h \ | plugins/include/molfile_plugin.h \ |
| plugins/include/vmdplugin.h \ | plugins/include/vmdplugin.h \ |
| | src/CudaNonbondedTables.h \ |
| src/CudaTileListKernel.h \ | src/CudaTileListKernel.h \ |
| src/CudaComputeNonbondedKernel.h \ | src/CudaComputeNonbondedKernel.h \ |
| src/CudaComputeGBISKernel.h \ | src/CudaComputeGBISKernel.h \ |
| |
| inc/PmeSolver.decl.h \ | inc/PmeSolver.decl.h \ |
| src/DeviceCUDA.h | src/DeviceCUDA.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/CudaComputeNonbonded.o $(COPTC) src/CudaComputeNonbonded.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/CudaComputeNonbonded.o $(COPTC) src/CudaComputeNonbonded.C |
| | obj/CudaNonbondedTables.o: \ |
| | obj/.exists \ |
| | src/CudaNonbondedTables.C \ |
| | src/NamdTypes.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/ComputeNonbondedUtil.h \ |
| | src/ReductionMgr.h \ |
| | src/main.h \ |
| | src/BOCgroup.h \ |
| | src/ProcessorPrivate.h \ |
| | src/Molecule.h \ |
| | src/parm.h \ |
| | src/structures.h \ |
| | src/ConfigList.h \ |
| | src/UniqueSet.h \ |
| | src/UniqueSetRaw.h \ |
| | src/Hydrogen.h \ |
| | src/SortableResizeArray.h \ |
| | src/GromacsTopFile.h \ |
| | src/GridForceGrid.h \ |
| | src/Tensor.h \ |
| | src/SimParameters.h \ |
| | src/Lattice.h \ |
| | src/MGridforceParams.h \ |
| | src/strlib.h \ |
| | src/InfoStream.h \ |
| | src/MStream.h \ |
| | plugins/include/molfile_plugin.h \ |
| | plugins/include/vmdplugin.h \ |
| | src/LJTable.h \ |
| | src/CudaUtils.h \ |
| | src/CudaNonbondedTables.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/CudaNonbondedTables.o $(COPTC) src/CudaNonbondedTables.C |
| obj/CudaPmeSolver.o: \ | obj/CudaPmeSolver.o: \ |
| obj/.exists \ | obj/.exists \ |
| src/CudaPmeSolver.C \ | src/CudaPmeSolver.C \ |
| |
| src/Random.h \ | src/Random.h \ |
| inc/ParallelIOMgr.def.h | inc/ParallelIOMgr.def.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/ParallelIOMgr.o $(COPTC) src/ParallelIOMgr.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/ParallelIOMgr.o $(COPTC) src/ParallelIOMgr.C |
| | obj/ComputeBondedCUDAKernel.o: \ |
| | obj/.exists \ |
| | src/ComputeBondedCUDAKernel.cu \ |
| | src/ComputeBondedCUDAKernel.h \ |
| | src/CudaUtils.h \ |
| | src/TupleTypesCUDA.h \ |
| | src/CudaNonbondedTables.h \ |
| | src/DeviceCUDA.h |
| | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/ComputeBondedCUDAKernel.o $(COPTC) `$(NATIVEPATH) src/`ComputeBondedCUDAKernel.cu |
| obj/ComputeNonbondedCUDAKernel.o: \ | obj/ComputeNonbondedCUDAKernel.o: \ |
| obj/.exists \ | obj/.exists \ |
| src/ComputeNonbondedCUDAKernel.cu \ | src/ComputeNonbondedCUDAKernel.cu \ |
| |
| src/CudaComputeNonbondedKernel.h \ | src/CudaComputeNonbondedKernel.h \ |
| src/CudaUtils.h \ | src/CudaUtils.h \ |
| src/CudaTileListKernel.h \ | src/CudaTileListKernel.h \ |
| | src/CudaNonbondedTables.h \ |
| src/DeviceCUDA.h | src/DeviceCUDA.h |
| $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/CudaComputeNonbondedKernel.o $(COPTC) `$(NATIVEPATH) src/`CudaComputeNonbondedKernel.cu | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/CudaComputeNonbondedKernel.o $(COPTC) `$(NATIVEPATH) src/`CudaComputeNonbondedKernel.cu |
| obj/CudaPmeSolverUtilKernel.o: \ | obj/CudaPmeSolverUtilKernel.o: \ |
| |
| src/CudaTileListKernel.h \ | src/CudaTileListKernel.h \ |
| src/DeviceCUDA.h | src/DeviceCUDA.h |
| $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/CudaTileListKernel.o $(COPTC) `$(NATIVEPATH) src/`CudaTileListKernel.cu | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/CudaTileListKernel.o $(COPTC) `$(NATIVEPATH) src/`CudaTileListKernel.cu |
| obj/DeviceCUDAkernel.o: \ | |
| obj/.exists \ | |
| src/DeviceCUDAkernel.cu \ | |
| src/CudaUtils.h | |
| $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/DeviceCUDAkernel.o $(COPTC) `$(NATIVEPATH) src/`DeviceCUDAkernel.cu | |
| obj/dcdplugin.o: \ | obj/dcdplugin.o: \ |
| obj/.exists \ | obj/.exists \ |
| plugins/molfile_plugin/src/dcdplugin.c \ | plugins/molfile_plugin/src/dcdplugin.c \ |