| version 1.190 | version 1.191 |
|---|
| |
| inc/NamdDummyLB.decl.h \ | inc/NamdDummyLB.decl.h \ |
| inc/ComputeMgr.decl.h \ | inc/ComputeMgr.decl.h \ |
| inc/ComputePmeMgr.decl.h \ | inc/ComputePmeMgr.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| inc/OptPmeMgr.decl.h \ | inc/OptPmeMgr.decl.h \ |
| inc/PmeFFTLib.decl.h \ | inc/PmeFFTLib.decl.h \ |
| inc/ComputeExtMgr.decl.h \ | inc/ComputeExtMgr.decl.h \ |
| |
| inc/NamdDummyLB.decl.h \ | inc/NamdDummyLB.decl.h \ |
| inc/ComputeMgr.decl.h \ | inc/ComputeMgr.decl.h \ |
| inc/ComputePmeMgr.decl.h \ | inc/ComputePmeMgr.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| inc/OptPmeMgr.decl.h \ | inc/OptPmeMgr.decl.h \ |
| inc/PmeFFTLib.decl.h \ | inc/PmeFFTLib.decl.h \ |
| inc/ComputeExtMgr.decl.h \ | inc/ComputeExtMgr.decl.h \ |
| |
| src/PressureProfile.h \ | src/PressureProfile.h \ |
| src/Debug.h | src/Debug.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputeCrossterms.o $(COPTC) src/ComputeCrossterms.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputeCrossterms.o $(COPTC) src/ComputeCrossterms.C |
| | obj/ComputeCUDAMgr.o: \ |
| | obj/.exists \ |
| | src/ComputeCUDAMgr.C \ |
| | src/NamdTypes.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/Node.h \ |
| | src/main.h \ |
| | src/ProcessorPrivate.h \ |
| | src/BOCgroup.h \ |
| | inc/Node.decl.h \ |
| | src/ComputeCUDAMgr.h \ |
| | src/CudaUtils.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| | src/CudaComputeNonbonded.h \ |
| | src/Compute.h \ |
| | src/Box.h \ |
| | src/OwnerBox.h \ |
| | src/PatchTypes.h \ |
| | src/Lattice.h \ |
| | src/Tensor.h \ |
| | src/ComputeNonbondedUtil.h \ |
| | src/ReductionMgr.h \ |
| | src/Molecule.h \ |
| | src/parm.h \ |
| | src/structures.h \ |
| | src/ConfigList.h \ |
| | src/UniqueSet.h \ |
| | src/UniqueSetRaw.h \ |
| | src/Hydrogen.h \ |
| | src/SortableResizeArray.h \ |
| | src/GromacsTopFile.h \ |
| | src/GridForceGrid.h \ |
| | src/SimParameters.h \ |
| | src/MGridforceParams.h \ |
| | src/strlib.h \ |
| | src/InfoStream.h \ |
| | src/MStream.h \ |
| | plugins/include/molfile_plugin.h \ |
| | plugins/include/vmdplugin.h \ |
| | src/CudaTileListKernel.h \ |
| | src/CudaComputeNonbondedKernel.h \ |
| | src/CudaComputeGBISKernel.h \ |
| | src/ComputeMgr.h \ |
| | src/GlobalMaster.h \ |
| | src/GlobalMasterServer.h \ |
| | inc/ComputeMgr.decl.h \ |
| | src/DeviceCUDA.h \ |
| | inc/ComputeCUDAMgr.def.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputeCUDAMgr.o $(COPTC) src/ComputeCUDAMgr.C |
| obj/ComputeCylindricalBC.o: \ | obj/ComputeCylindricalBC.o: \ |
| obj/.exists \ | obj/.exists \ |
| src/ComputeCylindricalBC.C \ | src/ComputeCylindricalBC.C \ |
| |
| src/PmeBase.h \ | src/PmeBase.h \ |
| src/MathArray.h \ | src/MathArray.h \ |
| src/Array.h \ | src/Array.h \ |
| | src/ComputePmeCUDA.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | src/ComputeCUDAMgr.h \ |
| | src/CudaUtils.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| | src/CudaComputeNonbonded.h \ |
| | src/CudaTileListKernel.h \ |
| | src/CudaComputeNonbondedKernel.h \ |
| | src/CudaComputeGBISKernel.h \ |
| | src/ComputePmeCUDAMgr.h \ |
| | src/PmeSolver.h \ |
| | src/PmeSolverUtil.h \ |
| | inc/PmeSolver.decl.h \ |
| src/OptPme.h \ | src/OptPme.h \ |
| inc/OptPmeMgr.decl.h \ | inc/OptPmeMgr.decl.h \ |
| inc/PmeFFTLib.decl.h \ | inc/PmeFFTLib.decl.h \ |
| |
| src/ComputePmeCUDAKernel.h \ | src/ComputePmeCUDAKernel.h \ |
| inc/ComputePmeMgr.def.h | inc/ComputePmeMgr.def.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputePme.o $(COPTC) src/ComputePme.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputePme.o $(COPTC) src/ComputePme.C |
| | obj/ComputePmeCUDA.o: \ |
| | obj/.exists \ |
| | src/ComputePmeCUDA.C \ |
| | src/Node.h \ |
| | src/main.h \ |
| | src/ProcessorPrivate.h \ |
| | src/BOCgroup.h \ |
| | inc/Node.decl.h \ |
| | src/SimParameters.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/Lattice.h \ |
| | src/NamdTypes.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/Tensor.h \ |
| | src/MGridforceParams.h \ |
| | src/strlib.h \ |
| | src/InfoStream.h \ |
| | src/MStream.h \ |
| | src/Priorities.h \ |
| | src/ComputeNonbondedUtil.h \ |
| | src/ReductionMgr.h \ |
| | src/Molecule.h \ |
| | src/parm.h \ |
| | src/structures.h \ |
| | src/ConfigList.h \ |
| | src/UniqueSet.h \ |
| | src/UniqueSetRaw.h \ |
| | src/Hydrogen.h \ |
| | src/SortableResizeArray.h \ |
| | src/GromacsTopFile.h \ |
| | src/GridForceGrid.h \ |
| | plugins/include/molfile_plugin.h \ |
| | plugins/include/vmdplugin.h \ |
| | src/ComputePmeCUDA.h \ |
| | src/PmeBase.h \ |
| | src/MathArray.h \ |
| | src/Array.h \ |
| | src/PatchTypes.h \ |
| | src/Compute.h \ |
| | src/Box.h \ |
| | src/OwnerBox.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | src/ComputePmeCUDAMgr.h \ |
| | src/PmeSolver.h \ |
| | src/PatchMap.h \ |
| | src/HomePatchList.h \ |
| | src/SortedArray.h \ |
| | src/ResizeArrayIter.h \ |
| | src/PmeSolverUtil.h \ |
| | inc/PmeSolver.decl.h \ |
| | src/HomePatch.h \ |
| | src/Patch.h \ |
| | src/UniqueSortedArray.h \ |
| | src/MigrateAtomsMsg.h \ |
| | src/Migration.h \ |
| | inc/PatchMgr.decl.h \ |
| | src/Settle.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputePmeCUDA.o $(COPTC) src/ComputePmeCUDA.C |
| | obj/ComputePmeCUDAMgr.o: \ |
| | obj/.exists \ |
| | src/ComputePmeCUDAMgr.C \ |
| | src/Node.h \ |
| | src/main.h \ |
| | src/ProcessorPrivate.h \ |
| | src/BOCgroup.h \ |
| | inc/Node.decl.h \ |
| | src/PatchMap.h \ |
| | src/NamdTypes.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/HomePatchList.h \ |
| | src/SortedArray.h \ |
| | src/SortableResizeArray.h \ |
| | src/ResizeArrayIter.h \ |
| | src/Lattice.h \ |
| | src/Tensor.h \ |
| | src/WorkDistrib.h \ |
| | src/ComputeMap.h \ |
| | inc/WorkDistrib.decl.h \ |
| | src/Priorities.h \ |
| | src/CudaUtils.h \ |
| | src/SimParameters.h \ |
| | src/MGridforceParams.h \ |
| | src/strlib.h \ |
| | src/InfoStream.h \ |
| | src/MStream.h \ |
| | src/CudaPmeSolverUtil.h \ |
| | src/PmeSolverUtil.h \ |
| | src/PmeBase.h \ |
| | src/MathArray.h \ |
| | src/Array.h \ |
| | src/CudaPmeSolverUtilKernel.h \ |
| | src/ComputePmeCUDAMgr.h \ |
| | src/PmeSolver.h \ |
| | src/ReductionMgr.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | src/CudaPmeSolver.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | src/ComputePmeCUDA.h \ |
| | src/PatchTypes.h \ |
| | src/Compute.h \ |
| | src/Box.h \ |
| | src/OwnerBox.h \ |
| | src/DeviceCUDA.h \ |
| | inc/ComputePmeCUDAMgr.def.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/ComputePmeCUDAMgr.o $(COPTC) src/ComputePmeCUDAMgr.C |
| obj/OptPme.o: \ | obj/OptPme.o: \ |
| obj/.exists \ | obj/.exists \ |
| src/OptPme.C \ | src/OptPme.C \ |
| |
| src/ComputeNonbondedMICKernel.h \ | src/ComputeNonbondedMICKernel.h \ |
| src/Debug.h | src/Debug.h |
| $(CXX) $(CXXTHREADFLAGS) $(COPTO)obj/Controller.o $(COPTC) src/Controller.C | $(CXX) $(CXXTHREADFLAGS) $(COPTO)obj/Controller.o $(COPTC) src/Controller.C |
| | obj/CudaComputeNonbonded.o: \ |
| | obj/.exists \ |
| | src/CudaComputeNonbonded.C \ |
| | src/NamdTypes.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/Patch.h \ |
| | src/OwnerBox.h \ |
| | src/Box.h \ |
| | src/UniqueSortedArray.h \ |
| | src/SortedArray.h \ |
| | src/SortableResizeArray.h \ |
| | src/Lattice.h \ |
| | src/Tensor.h \ |
| | src/PatchTypes.h \ |
| | src/PatchMap.h \ |
| | src/HomePatchList.h \ |
| | src/ResizeArrayIter.h \ |
| | src/ProcessorPrivate.h \ |
| | src/BOCgroup.h \ |
| | src/ProxyMgr.h \ |
| | src/main.h \ |
| | src/UniqueSet.h \ |
| | src/UniqueSetRaw.h \ |
| | src/UniqueSetIter.h \ |
| | src/InfoStream.h \ |
| | inc/ProxyMgr.decl.h \ |
| | src/LJTable.h \ |
| | src/Node.h \ |
| | inc/Node.decl.h \ |
| | src/ObjectArena.h \ |
| | src/ReductionMgr.h \ |
| | src/CudaComputeNonbonded.h \ |
| | src/Compute.h \ |
| | src/CudaUtils.h \ |
| | src/ComputeNonbondedUtil.h \ |
| | src/Molecule.h \ |
| | src/parm.h \ |
| | src/structures.h \ |
| | src/ConfigList.h \ |
| | src/Hydrogen.h \ |
| | src/GromacsTopFile.h \ |
| | src/GridForceGrid.h \ |
| | src/SimParameters.h \ |
| | src/MGridforceParams.h \ |
| | src/strlib.h \ |
| | src/MStream.h \ |
| | plugins/include/molfile_plugin.h \ |
| | plugins/include/vmdplugin.h \ |
| | src/CudaTileListKernel.h \ |
| | src/CudaComputeNonbondedKernel.h \ |
| | src/CudaComputeGBISKernel.h \ |
| | src/ComputeMgr.h \ |
| | src/GlobalMaster.h \ |
| | src/GlobalMasterServer.h \ |
| | inc/ComputeMgr.decl.h \ |
| | src/WorkDistrib.h \ |
| | src/ComputeMap.h \ |
| | inc/WorkDistrib.decl.h \ |
| | src/HomePatch.h \ |
| | src/MigrateAtomsMsg.h \ |
| | src/Migration.h \ |
| | inc/PatchMgr.decl.h \ |
| | src/Settle.h \ |
| | src/Priorities.h \ |
| | src/ComputePmeCUDAMgr.h \ |
| | src/PmeBase.h \ |
| | src/MathArray.h \ |
| | src/Array.h \ |
| | src/PmeSolver.h \ |
| | src/PmeSolverUtil.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | src/DeviceCUDA.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/CudaComputeNonbonded.o $(COPTC) src/CudaComputeNonbonded.C |
| | obj/CudaPmeSolver.o: \ |
| | obj/.exists \ |
| | src/CudaPmeSolver.C \ |
| | src/Node.h \ |
| | src/main.h \ |
| | src/ProcessorPrivate.h \ |
| | src/BOCgroup.h \ |
| | inc/Node.decl.h \ |
| | src/Priorities.h \ |
| | src/ComputeNonbondedUtil.h \ |
| | src/NamdTypes.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/ReductionMgr.h \ |
| | src/Molecule.h \ |
| | src/parm.h \ |
| | src/structures.h \ |
| | src/ConfigList.h \ |
| | src/UniqueSet.h \ |
| | src/UniqueSetRaw.h \ |
| | src/Hydrogen.h \ |
| | src/SortableResizeArray.h \ |
| | src/GromacsTopFile.h \ |
| | src/GridForceGrid.h \ |
| | src/Tensor.h \ |
| | src/SimParameters.h \ |
| | src/Lattice.h \ |
| | src/MGridforceParams.h \ |
| | src/strlib.h \ |
| | src/InfoStream.h \ |
| | src/MStream.h \ |
| | plugins/include/molfile_plugin.h \ |
| | plugins/include/vmdplugin.h \ |
| | src/CudaPmeSolverUtil.h \ |
| | src/PmeSolverUtil.h \ |
| | src/PmeBase.h \ |
| | src/MathArray.h \ |
| | src/Array.h \ |
| | src/CudaUtils.h \ |
| | src/CudaPmeSolverUtilKernel.h \ |
| | src/ComputePmeCUDAMgr.h \ |
| | src/PmeSolver.h \ |
| | src/PatchMap.h \ |
| | src/HomePatchList.h \ |
| | src/SortedArray.h \ |
| | src/ResizeArrayIter.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | src/CudaPmeSolver.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | src/DeviceCUDA.h \ |
| | inc/CudaPmeSolver.def.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/CudaPmeSolver.o $(COPTC) src/CudaPmeSolver.C |
| | obj/CudaPmeSolverUtil.o: \ |
| | obj/.exists \ |
| | src/CudaPmeSolverUtil.C \ |
| | src/ComputeNonbondedUtil.h \ |
| | src/NamdTypes.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/ReductionMgr.h \ |
| | src/main.h \ |
| | src/BOCgroup.h \ |
| | src/ProcessorPrivate.h \ |
| | src/Molecule.h \ |
| | src/parm.h \ |
| | src/structures.h \ |
| | src/ConfigList.h \ |
| | src/UniqueSet.h \ |
| | src/UniqueSetRaw.h \ |
| | src/Hydrogen.h \ |
| | src/SortableResizeArray.h \ |
| | src/GromacsTopFile.h \ |
| | src/GridForceGrid.h \ |
| | src/Tensor.h \ |
| | src/SimParameters.h \ |
| | src/Lattice.h \ |
| | src/MGridforceParams.h \ |
| | src/strlib.h \ |
| | src/InfoStream.h \ |
| | src/MStream.h \ |
| | plugins/include/molfile_plugin.h \ |
| | plugins/include/vmdplugin.h \ |
| | src/ComputePmeCUDAMgr.h \ |
| | src/PmeBase.h \ |
| | src/MathArray.h \ |
| | src/Array.h \ |
| | src/PmeSolver.h \ |
| | src/PatchMap.h \ |
| | src/HomePatchList.h \ |
| | src/SortedArray.h \ |
| | src/ResizeArrayIter.h \ |
| | src/PmeSolverUtil.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | src/CudaPmeSolver.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | src/CudaPmeSolverUtil.h \ |
| | src/CudaUtils.h \ |
| | src/CudaPmeSolverUtilKernel.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/CudaPmeSolverUtil.o $(COPTC) src/CudaPmeSolverUtil.C |
| obj/CudaUtils.o: \ | obj/CudaUtils.o: \ |
| obj/.exists \ | obj/.exists \ |
| src/CudaUtils.C \ | src/CudaUtils.C \ |
| |
| inc/NamdDummyLB.decl.h \ | inc/NamdDummyLB.decl.h \ |
| inc/ComputeMgr.decl.h \ | inc/ComputeMgr.decl.h \ |
| inc/ComputePmeMgr.decl.h \ | inc/ComputePmeMgr.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| inc/OptPmeMgr.decl.h \ | inc/OptPmeMgr.decl.h \ |
| inc/PmeFFTLib.decl.h \ | inc/PmeFFTLib.decl.h \ |
| inc/ComputeExtMgr.decl.h \ | inc/ComputeExtMgr.decl.h \ |
| |
| inc/BroadcastMgr.decl.h \ | inc/BroadcastMgr.decl.h \ |
| src/BroadcastClient.h \ | src/BroadcastClient.h \ |
| inc/ComputePmeMgr.decl.h \ | inc/ComputePmeMgr.decl.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| inc/ComputeGridForceMgr.decl.h \ | inc/ComputeGridForceMgr.decl.h \ |
| inc/OptPmeMgr.decl.h \ | inc/OptPmeMgr.decl.h \ |
| src/Sync.h \ | src/Sync.h \ |
| |
| inc/NamdDummyLB.decl.h \ | inc/NamdDummyLB.decl.h \ |
| inc/ComputeMgr.decl.h \ | inc/ComputeMgr.decl.h \ |
| inc/ComputePmeMgr.decl.h \ | inc/ComputePmeMgr.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| inc/OptPmeMgr.decl.h \ | inc/OptPmeMgr.decl.h \ |
| inc/PmeFFTLib.decl.h \ | inc/PmeFFTLib.decl.h \ |
| inc/ComputeExtMgr.decl.h \ | inc/ComputeExtMgr.decl.h \ |
| |
| src/InfoStream.h \ | src/InfoStream.h \ |
| src/MStream.h | src/MStream.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/PmeRealSpace.o $(COPTC) src/PmeRealSpace.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/PmeRealSpace.o $(COPTC) src/PmeRealSpace.C |
| | obj/PmeSolver.o: \ |
| | obj/.exists \ |
| | src/PmeSolver.C \ |
| | src/Priorities.h \ |
| | src/PmeSolver.h \ |
| | src/ReductionMgr.h \ |
| | src/main.h \ |
| | src/NamdTypes.h \ |
| | src/common.h \ |
| | src/Vector.h \ |
| | src/ResizeArray.h \ |
| | src/ResizeArrayRaw.h \ |
| | src/BOCgroup.h \ |
| | src/ProcessorPrivate.h \ |
| | src/PatchMap.h \ |
| | src/HomePatchList.h \ |
| | src/SortedArray.h \ |
| | src/SortableResizeArray.h \ |
| | src/ResizeArrayIter.h \ |
| | src/Lattice.h \ |
| | src/Tensor.h \ |
| | src/PmeSolverUtil.h \ |
| | src/PmeBase.h \ |
| | src/MathArray.h \ |
| | src/Array.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/PmeSolver.def.h |
| | $(CXX) $(CXXFLAGS) $(COPTO)obj/PmeSolver.o $(COPTC) src/PmeSolver.C |
| obj/ProcessorPrivate.o: \ | obj/ProcessorPrivate.o: \ |
| obj/.exists \ | obj/.exists \ |
| src/ProcessorPrivate.C \ | src/ProcessorPrivate.C \ |
| |
| inc/NamdDummyLB.decl.h \ | inc/NamdDummyLB.decl.h \ |
| inc/ComputeMgr.decl.h \ | inc/ComputeMgr.decl.h \ |
| inc/ComputePmeMgr.decl.h \ | inc/ComputePmeMgr.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| inc/OptPmeMgr.decl.h \ | inc/OptPmeMgr.decl.h \ |
| inc/PmeFFTLib.decl.h \ | inc/PmeFFTLib.decl.h \ |
| inc/ComputeExtMgr.decl.h \ | inc/ComputeExtMgr.decl.h \ |
| |
| inc/NamdDummyLB.decl.h \ | inc/NamdDummyLB.decl.h \ |
| inc/ComputeMgr.decl.h \ | inc/ComputeMgr.decl.h \ |
| inc/ComputePmeMgr.decl.h \ | inc/ComputePmeMgr.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | inc/CudaPmeSolver.decl.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputeCUDAMgr.decl.h \ |
| inc/OptPmeMgr.decl.h \ | inc/OptPmeMgr.decl.h \ |
| inc/PmeFFTLib.decl.h \ | inc/PmeFFTLib.decl.h \ |
| inc/ComputeExtMgr.decl.h \ | inc/ComputeExtMgr.decl.h \ |
| |
| inc/ProxyMgr.decl.h \ | inc/ProxyMgr.decl.h \ |
| src/Priorities.h \ | src/Priorities.h \ |
| src/SortAtoms.h \ | src/SortAtoms.h \ |
| | src/ComputePmeCUDAMgr.h \ |
| | src/PmeBase.h \ |
| | src/MathArray.h \ |
| | src/Array.h \ |
| | src/PmeSolver.h \ |
| | src/ReductionMgr.h \ |
| | src/PmeSolverUtil.h \ |
| | inc/PmeSolver.decl.h \ |
| | inc/ComputePmeCUDAMgr.decl.h \ |
| | src/DeviceCUDA.h \ |
| src/Debug.h \ | src/Debug.h \ |
| inc/WorkDistrib.def.h | inc/WorkDistrib.def.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/WorkDistrib.o $(COPTC) src/WorkDistrib.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/WorkDistrib.o $(COPTC) src/WorkDistrib.C |
| |
| src/Random.h \ | src/Random.h \ |
| inc/ParallelIOMgr.def.h | inc/ParallelIOMgr.def.h |
| $(CXX) $(CXXFLAGS) $(COPTO)obj/ParallelIOMgr.o $(COPTC) src/ParallelIOMgr.C | $(CXX) $(CXXFLAGS) $(COPTO)obj/ParallelIOMgr.o $(COPTC) src/ParallelIOMgr.C |
| | obj/ComputeNonbondedCUDAKernel.o: \ |
| | obj/.exists \ |
| | src/ComputeNonbondedCUDAKernel.cu \ |
| | src/CudaUtils.h \ |
| | src/ComputeNonbondedCUDAKernel.h \ |
| | src/ComputeNonbondedCUDAKernelBase.h \ |
| | src/ComputeGBISCUDAKernel.h \ |
| | src/ComputeGBIS.inl |
| | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/ComputeNonbondedCUDAKernel.o $(COPTC) `$(NATIVEPATH) src/`ComputeNonbondedCUDAKernel.cu |
| | obj/ComputePmeCUDAKernel.o: \ |
| | obj/.exists \ |
| | src/ComputePmeCUDAKernel.cu \ |
| | src/ComputePmeCUDAKernel.h |
| | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/ComputePmeCUDAKernel.o $(COPTC) `$(NATIVEPATH) src/`ComputePmeCUDAKernel.cu |
| | obj/CudaComputeGBISKernel.o: \ |
| | obj/.exists \ |
| | src/CudaComputeGBISKernel.cu \ |
| | src/CudaUtils.h \ |
| | src/CudaTileListKernel.h \ |
| | src/CudaComputeGBISKernel.h \ |
| | src/ComputeGBIS.inl \ |
| | src/DeviceCUDA.h |
| | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/CudaComputeGBISKernel.o $(COPTC) `$(NATIVEPATH) src/`CudaComputeGBISKernel.cu |
| | obj/CudaComputeNonbondedKernel.o: \ |
| | obj/.exists \ |
| | src/CudaComputeNonbondedKernel.cu \ |
| | src/CudaComputeNonbondedKernel.h \ |
| | src/CudaUtils.h \ |
| | src/CudaTileListKernel.h \ |
| | src/DeviceCUDA.h |
| | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/CudaComputeNonbondedKernel.o $(COPTC) `$(NATIVEPATH) src/`CudaComputeNonbondedKernel.cu |
| | obj/CudaPmeSolverUtilKernel.o: \ |
| | obj/.exists \ |
| | src/CudaPmeSolverUtilKernel.cu \ |
| | src/CudaUtils.h \ |
| | src/CudaPmeSolverUtilKernel.h |
| | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/CudaPmeSolverUtilKernel.o $(COPTC) `$(NATIVEPATH) src/`CudaPmeSolverUtilKernel.cu |
| | obj/CudaTileListKernel.o: \ |
| | obj/.exists \ |
| | src/CudaTileListKernel.cu \ |
| | src/CudaUtils.h \ |
| | src/CudaTileListKernel.h \ |
| | src/DeviceCUDA.h |
| | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/CudaTileListKernel.o $(COPTC) `$(NATIVEPATH) src/`CudaTileListKernel.cu |
| | obj/DeviceCUDAkernel.o: \ |
| | obj/.exists \ |
| | src/DeviceCUDAkernel.cu \ |
| | src/CudaUtils.h |
| | $(CUDACC) $(CUDACCOPTS) -Xptxas -v $(COPTO)obj/DeviceCUDAkernel.o $(COPTC) `$(NATIVEPATH) src/`DeviceCUDAkernel.cu |
| obj/dcdplugin.o: \ | obj/dcdplugin.o: \ |
| obj/.exists \ | obj/.exists \ |
| plugins/molfile_plugin/src/dcdplugin.c \ | plugins/molfile_plugin/src/dcdplugin.c \ |