symmetryMatrixFile File for transformation matrices
Acceptable Values: Path to matrix file
The symmetryMatrixFile is a path to a file that contains a list of transformation
matrices to make the monomers overlap. The file should contain one (and only one)
matrix for each monomer in the order of monomer ID designated in the symmetryFile.
Each symmetry group should have its own symmetryMatrixFile file containing only the matrices
used by the monomers in that group.
These should be formatted with spaces between columns and
NO spaces between rows as follows:
1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1
with different matrices separated by a single blank line (and no line before the first or after
the last matrix). This file is
OPTIONAL. Leave this line out to have namd generate the transformations