Up: NAMD 2.5 User's Guide
- Graph of van der Waals potential with and without switching
- Graph of electrostatic potential with and without shifting function
- Graph of electrostatic split between short and long range forces
- Example of cutoff and pairlist distance uses
- Dual topology description for an alchemical simulation.
Case example of the mutation of alanine into glycine.
The lighter color denotes the non-interacting, alternate