NAMD is a parallel molecular dynamics program for UNIX platforms designed for high-performance simulations in structural biology. This document describes how to use NAMD, its features, and the platforms on which it runs. The document is divided into several sections:
We have attempted to make this document and the NAMD Programmer's Guide both complete and easy to understand and to make NAMD itself easy to install and run. Please take a moment to help us improve the documentation and the code by filling out the users' survey at the end of this section.