From owner-biocore-l@rama.ks.uiuc.edu Wed Jan 28 16:03:28 2004 Received: from rama.ks.uiuc.edu (rama.ks.uiuc.edu [130.126.120.150]) by rama.ks.uiuc.edu (8.12.10/8.12.10) with ESMTP id i0SM3RtX023184 (version=TLSv1/SSLv3 cipher=EDH-RSA-DES-CBC3-SHA bits=168 verify=NOT) for ; Wed, 28 Jan 2004 16:03:28 -0600 (CST) Received: (from majordom@localhost) by rama.ks.uiuc.edu (8.12.10/8.12.9/Submit) id i0SM3RRE023183 for biocore-l-outgoing; Wed, 28 Jan 2004 16:03:27 -0600 (CST) X-Authentication-Warning: rama.ks.uiuc.edu: majordom set sender to owner-biocore-l@ks.uiuc.edu using -f Received: from jerusalem.ks.uiuc.edu (jerusalem.ks.uiuc.edu [130.126.120.53]) by rama.ks.uiuc.edu (8.12.10/8.12.10) with ESMTP id i0SM3RtW023179 for ; Wed, 28 Jan 2004 16:03:27 -0600 (CST) Received: (from kvandivo@localhost) by jerusalem.ks.uiuc.edu (8.11.6/8.9.3) id i0SM3Rg01461 for biocore-l@ks.uiuc.edu; Wed, 28 Jan 2004 16:03:27 -0600 Date: Wed, 28 Jan 2004 16:03:27 -0600 From: Kirby Vandivort To: biocore-l@ks.uiuc.edu Subject: biocore-l: Recent changes to the BioCoRE server at TCB Message-ID: <20040128220325.GB414@ks.uiuc.edu> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline User-Agent: Mutt/1.5.4i Sender: owner-biocore-l@ks.uiuc.edu Precedence: bulk Recent changes to the BioCoRE server that we are operating at TCB. General: * Revised the ordering of the modules so that the Documents section appears at the top, and then Workbench and Notebook. Also revised the ordering of items on the summary page. This will hopefully reduce confusion. * Fixed a bug that could occur if a user set a default project and then made that project "hidden". BioFS: * Fixed a bug that was causing some of the BioFS windows to open new windows as a result of their action. Now, it uses the existing window, rather than opening a new one. * Fixed some bugs that were limiting file upload size. * WebDAV: Added concurrency capabilities which should make access faster. * Removed the little checkbox that was appearing in the header of the BioFS listings since it doesn't do anything in that context. Summary Page: * Fixed a bug that was causing minimization and maximization of sections to not work correctly for some users. * Added (Shared Filesystem) to incidents of "BioFS" to make the purpose of the BioFS more clear. Control Panel: * Small synchronization tweak to see if it fixes the problem of the disappearing user list. * Fixed a bug that was causing the 'You've Got A Message' sound to play shortly after midnight in certain situations. Notebook: * Added an html table around message text to help with browsers that don't seem to wrap properly. VMD Launching: * fixed a problem with launching VMD from Mac OS X. -- Kirby Vandivort Theoretical and Senior Research Programmer Computational Biophysics Email: kvandivo@ks.uiuc.edu 3051 Beckman Institute http://www.ks.uiuc.edu/~kvandivo/ University of Illinois Phone: (217) 244-5711 405 N. Mathews Ave Fax : (217) 244-6078 Urbana, IL 61801, USA ======================================================================= For archives and subscription information about this Mailing List, visit the BioCoRE homepage at http://www.ks.uiuc.edu/Research/biocore/ From owner-biocore-l@rama.ks.uiuc.edu Thu Feb 5 15:41:38 2004 Received: from rama.ks.uiuc.edu (rama.ks.uiuc.edu [130.126.120.150]) by rama.ks.uiuc.edu (8.12.10/8.12.10) with ESMTP id i15LfctX010106 (version=TLSv1/SSLv3 cipher=EDH-RSA-DES-CBC3-SHA bits=168 verify=NOT) for ; Thu, 5 Feb 2004 15:41:38 -0600 (CST) Received: (from majordom@localhost) by rama.ks.uiuc.edu (8.12.10/8.12.9/Submit) id i15LfcpG010105 for biocore-l-outgoing; Thu, 5 Feb 2004 15:41:38 -0600 (CST) X-Authentication-Warning: rama.ks.uiuc.edu: majordom set sender to owner-biocore-l@ks.uiuc.edu using -f Received: from jerusalem.ks.uiuc.edu (jerusalem.ks.uiuc.edu [130.126.120.53]) by rama.ks.uiuc.edu (8.12.10/8.12.10) with ESMTP id i15LfbtW010101 for ; Thu, 5 Feb 2004 15:41:37 -0600 (CST) Received: (from kvandivo@localhost) by jerusalem.ks.uiuc.edu (8.11.6/8.9.3) id i15Lfbx17881 for biocore-l@ks.uiuc.edu; Thu, 5 Feb 2004 15:41:37 -0600 Date: Thu, 5 Feb 2004 15:41:37 -0600 From: Kirby Vandivort To: biocore-l@ks.uiuc.edu Subject: biocore-l: Recent changes to the BioCoRE server at TCB Message-ID: <20040205214136.GA15642@ks.uiuc.edu> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline User-Agent: Mutt/1.5.4i Sender: owner-biocore-l@ks.uiuc.edu Precedence: bulk Recent changes to the BioCoRE server that we are running here in the group: Control Panel: * Hovering the mouse over a project tab now displays the full name of the project. This can be handy for projects with long names. * Worked on limiting the java exceptions that get printed to the java console when the server is being restarted. * Revised the module ordering in the Project menu to match what is now on the web page. * Added a check to make sure that we only warn people about a new version of the control panel a single time. Summary Page: * Fixed a spacing problem with the (Shared Filesystem) that was added a couple of releases ago that caused line breaks to be inserted on older browsers. VMD Launcher: * Fixed a minor bug when clicking on user lists in the All User Test Project. -- Kirby Vandivort Theoretical and Senior Research Programmer Computational Biophysics Email: kvandivo@ks.uiuc.edu 3051 Beckman Institute http://www.ks.uiuc.edu/~kvandivo/ University of Illinois Phone: (217) 244-5711 405 N. Mathews Ave Fax : (217) 244-6078 Urbana, IL 61801, USA ======================================================================= For archives and subscription information about this Mailing List, visit the BioCoRE homepage at http://www.ks.uiuc.edu/Research/biocore/ From owner-biocore-l@rama.ks.uiuc.edu Wed May 5 15:32:36 2004 Received: from rama.ks.uiuc.edu (rama.ks.uiuc.edu [130.126.120.150]) by rama.ks.uiuc.edu (8.12.10/8.12.10) with ESMTP id i45KWaLr015697 (version=TLSv1/SSLv3 cipher=EDH-RSA-DES-CBC3-SHA bits=168 verify=NOT) for ; Wed, 5 May 2004 15:32:36 -0500 (CDT) Received: (from majordom@localhost) by rama.ks.uiuc.edu (8.12.10/8.12.9/Submit) id i45KWaMh015696 for biocore-l-outgoing; Wed, 5 May 2004 15:32:36 -0500 (CDT) X-Authentication-Warning: rama.ks.uiuc.edu: majordom set sender to owner-biocore-l@ks.uiuc.edu using -f Received: from jerusalem.ks.uiuc.edu (jerusalem.ks.uiuc.edu [130.126.120.53]) by rama.ks.uiuc.edu (8.12.10/8.12.10) with ESMTP id i45KWZLq015692 for ; Wed, 5 May 2004 15:32:35 -0500 (CDT) Received: (from kvandivo@localhost) by jerusalem.ks.uiuc.edu (8.11.6/8.9.3) id i45KWZL07862 for biocore-l@ks.uiuc.edu; Wed, 5 May 2004 15:32:35 -0500 Date: Wed, 5 May 2004 15:32:35 -0500 From: Kirby Vandivort To: biocore-l@ks.uiuc.edu Subject: biocore-l: Beta Version of New Environment Message-ID: <20040505203235.GA7644@ks.uiuc.edu> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline User-Agent: Mutt/1.5.4i Sender: owner-biocore-l@ks.uiuc.edu Precedence: bulk The BioCoRE team has just released the new version of the collaboratory into beta. You are more than welcome to log in and try it out. Instructions on doing so are at: http://www.ks.uiuc.edu/Research/biocore/beta2004/ -- Kirby Vandivort Theoretical and Senior Research Programmer Computational Biophysics Email: kvandivo@ks.uiuc.edu 3051 Beckman Institute http://www.ks.uiuc.edu/~kvandivo/ University of Illinois Phone: (217) 244-5711 405 N. Mathews Ave Fax : (217) 244-6078 Urbana, IL 61801, USA ======================================================================= For archives and subscription information about this Mailing List, visit the BioCoRE homepage at http://www.ks.uiuc.edu/Research/biocore/ From owner-biocore-l@halifax.ks.uiuc.edu Thu Dec 9 16:28:36 2004 Received: from halifax.ks.uiuc.edu (halifax.ks.uiuc.edu [130.126.120.36]) by halifax.ks.uiuc.edu (8.12.10/8.12.10) with ESMTP id iB9MSaCS027112 (version=TLSv1/SSLv3 cipher=DHE-RSA-AES256-SHA bits=256 verify=NOT) for ; Thu, 9 Dec 2004 16:28:36 -0600 (CST) Received: (from majordom@localhost) by halifax.ks.uiuc.edu (8.12.10/8.12.9/Submit) id iB9MSasG027111 for biocore-l-outgoing; Thu, 9 Dec 2004 16:28:36 -0600 (CST) X-Authentication-Warning: halifax.ks.uiuc.edu: majordom set sender to owner-biocore-l@ks.uiuc.edu using -f Received: from [130.126.120.172] (IDENT:U2FsdGVkX18MocUP+plopJcscKXDTaeaD9yb8Yw20+0@jerusalem.ks.uiuc.edu [130.126.120.172]) by halifax.ks.uiuc.edu (8.12.10/8.12.10) with ESMTP id iB9M7RCR025801; Thu, 9 Dec 2004 16:07:27 -0600 (CST) Message-ID: <41B8CC9F.4070904@ks.uiuc.edu> Date: Thu, 09 Dec 2004 16:07:27 -0600 From: Kirby Vandivort User-Agent: Mozilla Thunderbird 0.8 (X11/20040913) X-Accept-Language: en-us, en MIME-Version: 1.0 To: g_beckman@ks.uiuc.edu CC: biocore-l@ks.uiuc.edu Subject: biocore-l: New BioCoRE Release Content-Type: text/plain; charset=ISO-8859-1; format=flowed Content-Transfer-Encoding: 7bit Sender: owner-biocore-l@ks.uiuc.edu Precedence: bulk Earlier this week, the BioCoRE team released a major upgrade of the BioCoRE server and we would like to invite you to log in and try it out if you haven't already done so. You can log in from the standard BioCoRE page at: http://www.ks.uiuc.edu/Research/biocore/ Note: If you haven't ever logged in, you will want to set up Java WebStart for the Control Panel. Instructions on this are located at: http://www.ks.uiuc.edu/Research/biocore/javawebstart.shtml Among some of the changes: * The interface has received a major overhaul. You'll instantly notice that BioCoRE looks different. * Polls: BioCoRE now supports polls and quizzes. Project administrators (or others, if permission has been given) can pose questions for project members. Polls are set up via the web pages, and, at the appointed starting time, user's Control Panels pop up a box asking the question. * Control Panel: greatly reduced startup times. The very first time you start the control panel via webstart it might take a bit longer because it is downloading a few additional data files from the server (a one time download) * Control Panel: Private chats are now organized by user, into their own tab. * Control Panel: Google searches can be performed by saying /google search terms. * Control Panel: The control panel can perform math by saying /math 3 + 2. * WebDAV support: largely rewritten; more error cases are now handled. * The NAMD Configuration File Generator is no longer a java applet. It is now pure HTML and can be viewed by anyone with a reasonably modern web browser. * BioCoRE web pages are now themed via a preference in the utilities section. There are currently several themes available, and users are invited to submit new themes. Creation instructions are available. -- Kirby Vandivort Theoretical and Senior Research Programmer Computational Biophysics Email: kvandivo@ks.uiuc.edu 3051 Beckman Institute http://www.ks.uiuc.edu/~kvandivo/ University of Illinois Phone: (217) 244-5711 405 N. Mathews Ave Fax : (217) 244-6078 Urbana, IL 61801, USA ======================================================================= For archives and subscription information about this Mailing List, visit the BioCoRE homepage at http://www.ks.uiuc.edu/Research/biocore/