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VMD (current) Compound Members

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Here is a list of all class members with links to the class documentation for each member:

- _ -

_needRedraw : DisplayDevice

- a -

a : iterobject, Msmpot_t
a_length : Timestep
aa_available() : DisplayDevice
aa_enabled() : DisplayDevice
aa_off() : OpenGLRenderer, DisplayDevice
aa_on() : OpenGLRenderer, DisplayDevice
aaAvailable : DisplayDevice
aaEnabled : DisplayDevice
aaPrevious : DisplayDevice
aasamples : FileRenderList, FileRenderer
abs_screen_loc_2D() : OpenGLRenderer, DisplayDevice
abs_screen_loc_3D() : OpenGLRenderer, DisplayDevice
abs_screen_pos() : DisplayDevice
act_on_command() : Win32Joystick, VMDCollab, UIText, UIObject, ToolFltkMenu, Spaceball, SaveTrajectoryFltkMenu, RenderFltkMenu, UIVR, MaterialFltkMenu, MainFltkMenu, IMDMgr, GraphicsFltkMenu, GeometryFltkMenu, FileChooserFltkMenu, DisplayFltkMenu, ColorFltkMenu
activate() : MoleculeList
activate_light() : Scene
activate_materials() : FileRenderer
activate_menus() : VMDApp
active : UIObject, MoleculeList, DrawMolecule
actual_radius : MolData
add() : GridList, AtomList, IndexList, FileRenderList
add_angle() : BaseMolecule
add_atom() : Residue, BaseMolecule
add_bond() : BaseMolecule, MolAtom
add_bond_dupcheck() : BaseMolecule
add_buttons() : Tool
add_cent_trans() : Displayable
add_cfunction() : SymbolTable
add_child() : Displayable
add_color_category() : Scene
add_color_item() : Scene
add_color_names() : MoleculeList
add_cone() : MoleculeGraphics
add_coor_file() : Molecule
add_cterm() : BaseMolecule
add_custom_singleword() : SymbolTable
add_cylinder() : MoleculeGraphics
add_dihedral() : BaseMolecule
add_feedback() : Tool
add_geometry() : GeometryList
add_glob_trans() : Displayable
add_improper() : BaseMolecule
add_keyword() : SymbolTable
add_line() : MoleculeGraphics
add_map_to_molecule() : VolMapCreateILS
add_material() : MaterialList
add_menu() : VMDApp
add_molecule() : MoleculeList
add_name() : NameList< T >
add_pickable() : PickList
add_pickpoint() : MoleculeGraphics
add_plugin() : PluginMgr
add_point() : MoleculeGraphics
add_rep() : MoleculeList, DrawMolecule
add_rot() : Displayable
add_singleword() : SymbolTable
add_sphere() : MoleculeGraphics
add_stringfctn() : SymbolTable
add_text() : MoleculeGraphics
add_tool_with_USL() : UIVR
add_tracker() : Tool
add_triangle() : MoleculeGraphics
add_tricolor() : MoleculeGraphics
add_trinorm() : MoleculeGraphics
add_volume_data() : BaseMolecule
add_wavefunction() : QMTimestep
ADDBOND : PickModeList, Mouse
addconstraint() : VRPNFeedback, Feedback
addForce() : Molecule
addforcefield() : VRPNFeedback, Feedback
addLinkagePath() : SmallRingLinkages
addPath() : LinkageEdge
addPersistentForce() : Molecule
addplaneconstraint() : VRPNFeedback, Tool, Feedback
addto_far_clip() : DisplayDevice
addto_near_clip() : DisplayDevice
alignmat : ComputeOccupancyMap_t
alive() : SpaceballTracker, SpaceballButtons, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, Tool, FreeVRTracker, FreeVRButtons, CaveTracker, CaveButtons
allselected : DispCmdPickPointIndexArray
alpha : Timestep
ALT : DisplayDevice
ALTLOC : BaseMolecule
altlocindex : MolAtom
altlocNames : BaseMolecule
ambient : VMDDisplayList, Material
anaface : MSMSFace
analyze() : BaseMolecule
angles : BaseMolecule
ANGLES : BaseMolecule
angleTypeNames : BaseMolecule
angleTypes : BaseMolecule
ANGLETYPES : BaseMolecule
anim : VMDApp
ANIM_DELETE : Command
anim_dir() : Animation
ANIM_DIRECTION : Command
ANIM_DUP : Command
ANIM_FORWARD : Animation
ANIM_FORWARD1 : Animation
ANIM_JUMP : Command
ANIM_LOOP : Animation
ANIM_NEW_FRAME : Command
ANIM_NEW_NUM_FRAMES : Command
ANIM_ONCE : Animation
ANIM_PAUSE : Animation
ANIM_READ : Command
ANIM_REVERSE : Animation
ANIM_REVERSE1 : Animation
ANIM_ROCK : Animation
ANIM_SKIP : Command
ANIM_SPEED : Command
anim_style() : Animation
ANIM_STYLE : Command
ANIM_TOTAL_DIRS : Animation
ANIM_TOTAL_STYLES : Animation
ANIM_WRITE : Command
ANIMATE : Spaceball
Animation() : Animation
animation_dir_name() : VMDApp
animation_num_dirs() : VMDApp
animation_num_styles() : VMDApp
animation_set_dir() : VMDApp
animation_set_frame() : VMDApp
animation_set_speed() : VMDApp
animation_set_stride() : VMDApp
animation_set_style() : VMDApp
animation_style_name() : VMDApp
AnimDir : Animation
AnimStyle : Animation
ao_enabled() : DisplayDevice
aoAmbient : DisplayDevice
aoDirect : DisplayDevice
aoEnabled : DisplayDevice
aosamples : FileRenderList, FileRenderer
app : VolMapCreate, UIObject, ctxt, PyAtomSelObject, PickModeUser, PickModeMolLabel, PickModeAddBond, GraphicsFltkMenu, DrawMolecule
app_win : spaceballhandle
append() : VMDDisplayList, SortableArray< T >, LinkagePath, SmallRing, ResizeArray< T >, Fragment, Displayable, CommandQueue
append_frame() : DrawMolecule
append_text() : VMDApp
appendList() : PlainTextInterp
appendString() : PlainTextInterp
apply_format_to_selected_labels() : GeometryFltkMenu
apply_offset_to_selected_labels() : GeometryFltkMenu
arclength : RibbonFrame
argc : CmdToolCreate
argc_m : VMDApp
argv_m : VMDApp
ArtDisplayDevice() : ArtDisplayDevice
Aspect : DisplayDevice
aspect() : DisplayDevice
aspectratio : FileRenderList, FileRenderer
assign_rep() : Tool
assign_wavef_id() : QMData
ATI : OpenGLExtensions
atom : BaseMolecule, BinOfAtoms, Msmpot_t
atom0 : bond
atom1 : bond
atom_basis : orbthrparms
atom_displayed() : DrawMolItem, DrawMolecule
atom_formatted_name() : GeometryMol
atom_fragment() : BaseMolecule
atom_full_name() : GeometryMol
atom_residue() : BaseMolecule
atom_sel_mol : atomsel_ctxt
atom_short_name() : GeometryMol
AtomColor() : AtomColor
atomColor : DrawMolItem
AtomEntry() : AtomEntry
AtomGrid() : AtomGrid
AtomGridCell() : AtomGridCell
atomicnum : basis_atom_t
atomicnumber : MolAtom
ATOMICNUMBER : BaseMolecule
atomids : MSMSInterface
AtomList() : AtomList
atomNames : BaseMolecule
atomparser_node() : atomparser_node
atompos : orbthrparms
AtomRep() : AtomRep
atomRep : DrawMolItem
atoms : enthrparms, SmallRing, Residue, enthrparms
AtomSel() : AtomSel
atomSel : PyAtomSelObject, DrawMolItem
ATOMSEL_ADDMACRO : Command
atomsel_ctxt() : atomsel_ctxt
ATOMSEL_DELMACRO : Command
atomSelParser : VMDApp
atomType : MolAtom
atomTypes : BaseMolecule
auto_update() : GraphicsFltkMenu
autobonds : FileSpec
AUX : DisplayDevice
avail : vmdwinjoystick
ax : ComputeOccupancyMap_t
Axes() : Axes
axes : VMDApp, Best
AXES_LOWERLEFT : Axes
AXES_LOWERRIGHT : Axes
AXES_ORIGIN : Axes
axes_set_location() : VMDApp
AXES_UPPERLEFT : Axes
AXES_UPPERRIGHT : Axes
AxesPos : Axes
AXESPOS_TOTAL : Axes
axis : Symmetry, CmdRockOn, CmdRotate
ay : ComputeOccupancyMap_t
az : ComputeOccupancyMap_t

- b -

B2_LEFT : DisplayDevice
B2_MIDDLE : DisplayDevice
B2_RIGHT : DisplayDevice
B_ESC : DisplayDevice
B_F1 : DisplayDevice
B_F10 : DisplayDevice
B_F11 : DisplayDevice
B_F12 : DisplayDevice
B_F2 : DisplayDevice
B_F3 : DisplayDevice
B_F4 : DisplayDevice
B_F5 : DisplayDevice
B_F6 : DisplayDevice
B_F7 : DisplayDevice
B_F8 : DisplayDevice
B_F9 : DisplayDevice
B_LEFT : Mouse, DisplayDevice
b_length : Timestep
B_MIDDLE : Mouse, DisplayDevice
B_NONE : Mouse
B_RIGHT : Mouse, DisplayDevice
BACKBONE : AtomColor
backColor : FileRenderer
background_mode() : Scene, DisplayDevice
background_processing() : VMDApp
background_processing_clear() : VMDApp
background_processing_set() : VMDApp
backgroundmode : DisplayDevice
BAD_RANGE : MSMSInterface
BaseMolecule() : BaseMolecule
basis : shell_t
basis_array : orbthrparms
basis_string : QMData
basisa : MolData
basisb : MolData
basisc : MolData
BEADS : AtomRep
begFrame : CoorPluginData, CmdAnimDelete, CmdAnimWriteFile
beta : BaseMolecule, Timestep
BETA : AtomColor
BFACTOR : BaseMolecule
bin : ComputeOccupancyMap_t, occthrparms_t
bin_offsets : ComputeOccupancyMap_t
bin_zero : ComputeOccupancyMap_t, occthrparms_t
binBase : MsmpotCuda_t
bincnt : ComputeOccupancyMap_t
bincnt_zero : ComputeOccupancyMap_t
bincntBase : MsmpotCuda_t
bincntZero : MsmpotCuda_t
binlen : MsmpotCuda_t
binoffsets : occthrparms_t
binZero : MsmpotCuda_t
block_total : MsmpotCuda_t
bonded() : MolAtom
bondorders() : BaseMolecule
BONDORDERS : BaseMolecule
BONDRAD : AtomRep
BONDRES : AtomRep
bonds : MolAtom
BONDS : BaseMolecule, AtomRep
bondto : bondlist
bondTo : MolAtom
bondTypeNames : BaseMolecule
bondtypes() : BaseMolecule
BONDTYPES : BaseMolecule
boxatom : bondsearchthrparms
boxby2 : gofrparms_t
bucket : inthash_t, hash_t
buffer : MsmpotLattice_t
build() : AtomGrid
build3Dmipmaps() : OpenGLRenderer
buttonchanged : vmdwinjoystick
buttonpressevent : xidevhandle
buttonpresseventclass : xidevhandle
buttonreleaseevent : xidevhandle
buttonreleaseeventclass : xidevhandle
buttons : vmdwinjoystick, spaceballevent
Buttons() : DisplayDevice, Buttons
bx : ComputeOccupancyMap_t
bx_1 : ComputeOccupancyMap_t, occthrparms_t
by : ComputeOccupancyMap_t
BY : CmdScale, CmdTranslate, CmdRotate, CmdRotMat
by_1 : ComputeOccupancyMap_t, occthrparms_t
byOrTo : CmdScale, CmdTranslate, CmdRotate, CmdRotMat
bz : ComputeOccupancyMap_t
bz_1 : ComputeOccupancyMap_t, occthrparms_t

- c -

c : flint_t
C : elementsummary
c_length : Timestep
cache_mode() : DisplayDevice
cache_name() : DisplayDevice
cacheMode : DisplayDevice
cacheModes : DisplayDevice
cacheNames : DisplayDevice
cacheskip : Displayable, VMDDisplayList
calc_eyedir() : DisplayDevice
calc_frustum() : DisplayDevice
calculate() : GeometrySpring, GeometryMol, GeometryDihedral, GeometryBond, GeometryAngle
calculate_all() : GeometryMol
calculate_max_radius() : VolMapCreate
calculate_minmax() : VolMapCreate
calculate_mo() : Orbital
calculateTexgenPlanes() : VolumeTexture
can_read_bonds() : MolFilePlugin
can_read_graphics() : MolFilePlugin
can_read_metadata() : MolFilePlugin
can_read_structure() : MolFilePlugin
can_read_timesteps() : MolFilePlugin
can_read_volumetric() : MolFilePlugin
can_write_bonds() : MolFilePlugin
can_write_structure() : MolFilePlugin
can_write_timesteps() : MolFilePlugin
cancel() : Molecule
cancelbutton : FrameSelector
canmaphostmem : cudadevprops
caps : vmdwinjoystick
category : CmdColorItem
category_index() : Scene
category_item_index() : Scene
category_item_name() : Scene
category_item_value() : Scene
category_name() : Scene
CaveButtons() : CaveButtons
CaveDisplayDevice() : CaveDisplayDevice
CaveScene() : CaveScene
CaveTracker() : CaveTracker
cb() : PBCControls
cbits : compile_data
cCatStr : CmdColorName
cColStr : CmdColorName
cell_axes() : VolumetricData
cell_dirs() : VolumetricData
cell_lengths() : VolumetricData
cellen : Msmpot_t
cellIndex : GeometryMol
cent_trans_off() : Displayable
cent_trans_on() : Displayable
cent_translating() : Displayable
CENTER : PickModeList, Mouse
center : VMDClipPlane
center_all_molecules() : MoleculeList
center_from_top_molecule_reps() : MoleculeList
center_of_mass() : Symmetry
center_top_molecule() : MoleculeList
centt : Displayable
CHAIN : AtomColor
chainindex : MolAtom
chainNames : BaseMolecule
change() : AtomSel, AtomRep, AtomColor
change_center() : Displayable
change_color() : DrawMolItem
change_interp() : UIText
change_material() : Displayable
change_pbc() : DrawMolItem, DrawMolecule
change_rep() : MoleculeList, DrawMolItem, DrawMolecule
change_repcolor() : MoleculeList
change_repmat() : MoleculeList
change_repmethod() : MoleculeList
change_repsel() : MoleculeList
change_sel() : DrawMolItem
change_ss() : DrawMolItem
change_traj() : DrawMolItem
change_ts() : DrawMolItem, DrawMolecule
change_type() : UIVR
charge() : BaseMolecule
CHARGE : BaseMolecule, AtomColor
check_event() : Win32Joystick, VMDCollab, UIText, UIObject, Spaceball, UIVR, Tool, Mouse, IMDMgr, Animation
check_events() : CommandQueue
check_mol() : GeometryMol
check_pickable() : MoleculeList
check_plane() : Orbital
checkpoint_freq : VolMapCreate
checkpoint_name : VolMapCreate
child() : Displayable
child_index() : Displayable
children : Displayable
choose_buttons() : ToolFltkMenu
choose_feedback() : ToolFltkMenu
choose_tracker() : ToolFltkMenu
chop() : JString
Cinf : elementsummary
clear() : Surf, SmallRingLinkages, SmallRing, ResizeArray< T >, OpenGLRenderer, MSMSInterface, IsoSurface, IsoContour, myFl_Chart, DisplayDevice
clear_angles() : BaseMolecule
clear_bonds() : BaseMolecule
clear_changed() : DisplayColor
clear_cterms() : BaseMolecule
clear_dihedrals() : BaseMolecule
clear_impropers() : BaseMolecule
clear_rep() : Tool
clear_text() : VMDApp
clientdata : wkf_threadlaunch_struct
clip_center : FileRenderer
clip_color : FileRenderer
clip_mode : FileRenderer
clip_normal : FileRenderer
clip_width() : DisplayDevice
clipplane() : VMDDisplayList, Displayable
clipplanes : VMDDisplayList
clockratekhz : cudadevprops
clone() : SpaceballTracker, SpaceballButtons, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, FreeVRTracker, FreeVRButtons, Feedback, CaveTracker, CaveButtons, Buttons
close_coor_file() : Molecule
close_file() : SnapshotDisplayDevice, LibTachyonDisplayDevice, FileRenderer
closed() : SmallRing
CMD_AXES : Command
CMD_STAGE : Command
CmdAddAtomSelMacro() : CmdAddAtomSelMacro
CmdAnimDelete() : CmdAnimDelete
CmdAnimDir() : CmdAnimDir
CmdAnimDup() : CmdAnimDup
CmdAnimJump() : CmdAnimJump
CmdAnimNewFrame() : CmdAnimNewFrame
CmdAnimNewNumFrames() : CmdAnimNewNumFrames
CmdAnimSkip() : CmdAnimSkip
CmdAnimSpeed() : CmdAnimSpeed
CmdAnimStyle() : CmdAnimStyle
CmdAnimWriteFile() : CmdAnimWriteFile
cmdbuf : GraphicsFltkRep
CmdColorChange() : CmdColorChange
CmdColorItem() : CmdColorItem
CmdColorName() : CmdColorName
CmdColorScaleColors() : CmdColorScaleColors
CmdColorScaleMethod() : CmdColorScaleMethod
CmdColorScaleSettings() : CmdColorScaleSettings
CmdDelAtomSelMacro() : CmdDelAtomSelMacro
CmdDisplayAAOn() : CmdDisplayAAOn
CmdDisplayAOAmbient() : CmdDisplayAOAmbient
CmdDisplayAODirect() : CmdDisplayAODirect
CmdDisplayAOOn() : CmdDisplayAOOn
CmdDisplayAxes() : CmdDisplayAxes
CmdDisplayBackgroundGradientOn() : CmdDisplayBackgroundGradientOn
CmdDisplayCacheMode() : CmdDisplayCacheMode
CmdDisplayClip() : CmdDisplayClip
CmdDisplayClipFar() : CmdDisplayClipFar
CmdDisplayClipFarRel() : CmdDisplayClipFarRel
CmdDisplayClipNear() : CmdDisplayClipNear
CmdDisplayClipNearRel() : CmdDisplayClipNearRel
CmdDisplayCueDensity() : CmdDisplayCueDensity
CmdDisplayCueEnd() : CmdDisplayCueEnd
CmdDisplayCueMode() : CmdDisplayCueMode
CmdDisplayCueStart() : CmdDisplayCueStart
CmdDisplayCullingOn() : CmdDisplayCullingOn
CmdDisplayDepthcueOn() : CmdDisplayDepthcueOn
CmdDisplayEyesep() : CmdDisplayEyesep
CmdDisplayFocallen() : CmdDisplayFocallen
CmdDisplayFPSOn() : CmdDisplayFPSOn
CmdDisplayLightHL() : CmdDisplayLightHL
CmdDisplayLightMove() : CmdDisplayLightMove
CmdDisplayLightOn() : CmdDisplayLightOn
CmdDisplayLightRot() : CmdDisplayLightRot
CmdDisplayProj() : CmdDisplayProj
CmdDisplayRenderMode() : CmdDisplayRenderMode
CmdDisplayScreenDistance() : CmdDisplayScreenDistance
CmdDisplayScreenHeight() : CmdDisplayScreenHeight
CmdDisplayShadowOn() : CmdDisplayShadowOn
CmdDisplayStageLocation() : CmdDisplayStageLocation
CmdDisplayStagePanels() : CmdDisplayStagePanels
CmdDisplayStereo() : CmdDisplayStereo
CmdIMDConnect() : CmdIMDConnect
CmdIMDCopyUnitCell() : CmdIMDCopyUnitCell
CmdIMDCopyUnitCellCommand : CmdIMDCopyUnitCell
CmdIMDRate() : CmdIMDRate
CmdIMDRateCommand : CmdIMDRate
CmdIMDSim() : CmdIMDSim
CmdIMDSimCommand : CmdIMDSim
CmdLabelAdd() : CmdLabelAdd
CmdLabelAddspring() : CmdLabelAddspring
CmdLabelDelete() : CmdLabelDelete
CmdLabelShow() : CmdLabelShow
CmdLabelTextFormat() : CmdLabelTextFormat
CmdLabelTextOffset() : CmdLabelTextOffset
CmdLabelTextSize() : CmdLabelTextSize
cmdList : Displayable
CmdMaterialAdd() : CmdMaterialAdd
CmdMaterialChange() : CmdMaterialChange
CmdMaterialDefault() : CmdMaterialDefault
CmdMaterialDelete() : CmdMaterialDelete
CmdMaterialRename() : CmdMaterialRename
CmdMenuExtensionAdd() : CmdMenuExtensionAdd
CmdMenuExtensionRemove() : CmdMenuExtensionRemove
CmdMenuShow() : CmdMenuShow
CmdMolActive() : CmdMolActive
CmdMolAddRep() : CmdMolAddRep
CmdMolBondsRecalc() : CmdMolBondsRecalc
CmdMolCancel() : CmdMolCancel
CmdMolChangeRep() : CmdMolChangeRep
CmdMolChangeRepItem() : CmdMolChangeRepItem
CmdMolColor() : CmdMolColor
CmdMolDelete() : CmdMolDelete
CmdMolDeleteRep() : CmdMolDeleteRep
CmdMolDrawFrames() : CmdMolDrawFrames
CmdMolFix() : CmdMolFix
CmdMolLoad() : CmdMolLoad
CmdMolMaterial() : CmdMolMaterial
CmdMolNew() : CmdMolNew
CmdMolNumPeriodic() : CmdMolNumPeriodic
CmdMolOn() : CmdMolOn
CmdMolReanalyze() : CmdMolReanalyze
CmdMolRename() : CmdMolRename
CmdMolRep() : CmdMolRep
CmdMolRepColorUpdate() : CmdMolRepColorUpdate
CmdMolRepSelUpdate() : CmdMolRepSelUpdate
CmdMolScaleMinmax() : CmdMolScaleMinmax
CmdMolSelect() : CmdMolSelect
CmdMolShowPeriodic() : CmdMolShowPeriodic
CmdMolShowRep() : CmdMolShowRep
CmdMolSmoothRep() : CmdMolSmoothRep
CmdMolSSRecalc() : CmdMolSSRecalc
CmdMolTop() : CmdMolTop
CmdMolVolume() : CmdMolVolume
CmdMouseMode() : CmdMouseMode
CmdPluginUpdate() : CmdPluginUpdate
cmdq : vmd_opencl_orbital_handle
cmdQueue : UIObject
cmdqueue : GeometryMol
CmdRender() : CmdRender
CmdRenderOption() : CmdRenderOption
CmdResetView() : CmdResetView
CmdRockOff() : CmdRockOff
CmdRockOn() : CmdRockOn
CmdRotate() : CmdRotate
CmdRotMat() : CmdRotMat
CmdScale() : CmdScale
CmdSpaceballMode() : CmdSpaceballMode
cmdStr : AtomSel, AtomRep, AtomColor
cmdText : Command
CmdToolAddDevice() : CmdToolAddDevice
CmdToolCallback() : CmdToolCallback
CmdToolChange() : CmdToolChange
CmdToolCreate() : CmdToolCreate
CmdToolDelete() : CmdToolDelete
CmdToolDeleteDevice() : CmdToolDeleteDevice
CmdToolOffset() : CmdToolOffset
CmdToolRep() : CmdToolRep
CmdToolScale() : CmdToolScale
CmdToolScaleForce() : CmdToolScaleForce
CmdToolScaleSpring() : CmdToolScaleSpring
CmdTranslate() : CmdTranslate
Cmdtype : Command
cNameStr : CmdColorName
code : real_pcre
coeff : prim_t
COL_REGEN : DrawMolItem
colindex_visible() : GraphicsFltkMenu
collintol : Symmetry
color : MoleculeList, VMDClipPlane, FileRenderer::LightState, DispCmdColorIndex, DepthSortObject, CmdColorChange, AtomColor
COLOR : MoleculeGraphics, CmdMolChangeRepItem
color_add_item() : VMDApp
COLOR_ADD_ITEM : Command
color_category() : VMDApp
color_category_item() : VMDApp
COLOR_CHANGE : Command
color_changed() : DisplayColor, Displayable
color_changename() : VMDApp
color_changevalue() : VMDApp
color_default_value() : VMDApp, Scene
color_get_from_name() : VMDApp
color_get_restype() : VMDApp
color_id() : DisplayColor
color_index() : VMDApp, Scene, AtomColor
color_mapping() : VMDApp
COLOR_NAME : Command
color_name() : VMDApp, Scene
color_rgb_changed() : Displayable
color_scale_changed() : Displayable
COLOR_SCALE_COLORS : Command
COLOR_SCALE_METHOD : Command
COLOR_SCALE_SETTINGS : Command
color_set_restype() : VMDApp
color_value() : VMDApp, Scene
colorCatIndex : MoleculeList
colorData : DisplayDevice
ColorFltkMenu() : ColorFltkMenu
COLORID : AtomColor
colorIndex : FileRenderer
ColorMethod : AtomColor
colors : CmdColorScaleColors
colorscale_info() : VMDApp
colorscale_method() : Scene
colorscale_method_current() : VMDApp
colorscale_method_index() : VMDApp
colorscale_method_name() : VMDApp, Scene
colorscale_setmethod() : VMDApp
colorscale_setvalues() : VMDApp
colorscale_value() : Scene
ColorscaleImage() : ColorscaleImage
com_index() : GeometryMol
Combinations() : Combinations
COMBINE_AVG : VolMapCreate
COMBINE_MAX : VolMapCreate
COMBINE_MIN : VolMapCreate
COMBINE_PMF : VolMapCreate
COMBINE_STDEV : VolMapCreate
CombineType : VolMapCreate
combo : shell_t, Combinations
combo_addframe() : VolMapCreate
combo_begin() : VolMapCreate
combo_end() : VolMapCreate
combo_export() : VolMapCreate
combolist : Combinations
comIndex : GeometryMol
Command() : Command
command_wanted() : UIObject
commandQueue : VMDApp
CommandQueue() : CommandQueue
comment() : VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, PSDisplayDevice, POV3DisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
commentBuffer : DrawMolItem
compare : JString
CompileShaders() : OpenGLShader
component : DrawMolecule, MSMSFace
component_from_pickable() : DrawMolecule
components() : DrawMolecule
compute() : VolMapCreateILS, Surf, IsoSurface, IsoContour
compute_all() : VolMapCreate
compute_frame() : VolMapCreateCoulombPotentialMSM, VolMapCreateCoulombPotential, VolMapCreateDistance, VolMapCreateOccupancy, VolMapCreateInterp, VolMapCreateDensity, VolMapCreateMask, VolMapCreate
compute_from_file() : MSMSInterface
compute_from_socket() : MSMSInterface
compute_init() : VolMapCreateCoulombPotentialMSM, VolMapCreateCoulombPotential, VolMapCreateDistance, VolMapCreateOccupancy, VolMapCreateInterp, VolMapCreateDensity, VolMapCreateMask, VolMapCreate
compute_volume_gradient() : VolumetricData, BaseMolecule
COMPUTED : MSMSInterface
computed_frames : VolMapCreate
computemode : cudadevprops
cone() : VrmlDisplayDevice, Vrml2DisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, POV3DisplayDevice, FileRenderer, ArtDisplayDevice
CONE : MoleculeGraphics
CONFORMATION : AtomColor
conformers : ComputeOccupancyMap_t, occthrparms_t
connect() : VMDCollab, IMDMgr
connected() : IMDMgr
constant() : Matrix4
CONTROL : DisplayDevice
convert() : symbol_data
coord : AtomData
CoorData() : CoorData
CoorDataState : CoorData
coordinates() : AtomSel
coords : ComputeOccupancyMap_t, MSMSInterface, MolData
CoorPluginData() : CoorPluginData
copy() : LinkagePath, SmallRing
COPYCELL_OFF : CmdIMDCopyUnitCell
COPYCELL_ON : CmdIMDCopyUnitCell
count : MolData
count_bonds() : BaseMolecule
count_h : gofrparms_t
count_i : gofrparms_t
count_o_end : gofrparms_t
count_o_start : gofrparms_t
cov() : MoleculeGraphics, DrawMolecule
cpDown : DisplayDevice
CPK : AtomRep
cpLeft : DisplayDevice
cpRight : DisplayDevice
cpu_only : ComputeOccupancyMap_t
cpUp : DisplayDevice
create() : Combinations
create_cmd_list() : GeometrySpring, GeometryMol, GeometryDihedral, GeometryBond, GeometryAtom, GeometryAngle
create_colorcmd() : GraphicsFltkMenu
create_matcmd() : GraphicsFltkMenu
create_multiframecmd() : GraphicsFltkMenu
create_orbital() : QMData
create_repcmd() : GraphicsFltkMenu
create_selcmd() : GraphicsFltkMenu
create_text() : CmdToolCallback, CmdToolDeleteDevice, CmdToolAddDevice, CmdToolRep, CmdToolOffset, CmdToolScaleSpring, CmdToolScaleForce, CmdToolScale, CmdToolDelete, CmdToolChange, CmdToolCreate, Command, CmdRockOff, CmdRockOn, CmdScale, CmdTranslate, CmdRotate, CmdRotMat, CmdRender, CmdPluginUpdate, CmdMolShowRep, CmdMolSmoothRep, CmdMolDrawFrames, CmdMolScaleMinmax, CmdMolNumPeriodic, CmdMolShowPeriodic, CmdMolRename, CmdMolSSRecalc, CmdMolBondsRecalc, CmdMolReanalyze, CmdMolDeleteRep, CmdMolRepColorUpdate, CmdMolRepSelUpdate, CmdMolChangeRepItem, CmdMolChangeRep, CmdMolAddRep, CmdMolMaterial, CmdMolColor, CmdMolRep, CmdMolSelect, CmdMolTop, CmdMolOn, CmdMolFix, CmdMolActive, CmdMolDelete, CmdMolCancel, CmdMolLoad, CmdMenuShow, CmdMaterialDefault, CmdMaterialDelete, CmdMaterialChange, CmdMaterialRename, CmdMaterialAdd, CmdLabelTextFormat, CmdLabelTextOffset, CmdLabelTextSize, CmdLabelDelete, CmdLabelShow, CmdLabelAddspring, CmdLabelAdd, CmdIMDCopyUnitCell, CmdIMDRate, CmdIMDSim, CmdIMDConnect, CmdDisplayLightMove, CmdDisplayLightRot, CmdDisplayLightHL, CmdDisplayLightOn, CmdDisplayStagePanels, CmdDisplayStageLocation, CmdDisplayAxes, CmdDisplayAODirect, CmdDisplayAOAmbient, CmdDisplayAOOn, CmdDisplayShadowOn, CmdDisplayCueDensity, CmdDisplayCueEnd, CmdDisplayCueStart, CmdDisplayCueMode, CmdDisplayClip, CmdDisplayFPSOn, CmdDisplayBackgroundGradientOn, CmdDisplayCullingOn, CmdDisplayDepthcueOn, CmdDisplayAAOn, CmdDisplayScreenDistance, CmdDisplayScreenHeight, CmdDisplayFocallen, CmdDisplayEyesep, CmdDisplayProj, CmdDisplayRenderMode, CmdDisplayCacheMode, CmdDisplayStereo, CmdResetView, CmdColorItem, CmdColorScaleColors, CmdColorScaleSettings, CmdColorScaleMethod, CmdColorChange, CmdColorName, CmdAnimDup, CmdAnimDelete, CmdAnimWriteFile, CmdAnimSpeed, CmdAnimSkip, CmdAnimJump, CmdAnimStyle, CmdAnimDir
create_tool() : ToolFltkMenu
create_unique_basis() : QMData
create_window() : VMDTkMenu
cterms : BaseMolecule
CTERMS : BaseMolecule
ctx : vmd_opencl_orbital_handle
ctxt() : ctxt
ctypes : match_data, compile_data
cubeindex : GRIDCELL, SQUARECELL
cuda : VMDApp
cuda_devpool() : DrawMolecule
CUDAAccel() : CUDAAccel
CUE_EXP : DisplayDevice
CUE_EXP2 : DisplayDevice
CUE_LINEAR : DisplayDevice
cue_mode_name() : DisplayDevice
cueDensity : DisplayDevice
cueEnd : DisplayDevice
cueing_available() : DisplayDevice
cueing_enabled() : DisplayDevice
cueing_off() : OpenGLRenderer, DisplayDevice
cueing_on() : OpenGLRenderer, DisplayDevice
cueingAvailable : DisplayDevice
cueingEnabled : DisplayDevice
cueMode : DisplayDevice
CueMode : DisplayDevice
cueStart : DisplayDevice
culling_available() : DisplayDevice
culling_enabled() : DisplayDevice
culling_off() : OpenGLRenderer, DisplayDevice
culling_on() : OpenGLRenderer, DisplayDevice
cullingAvailable : DisplayDevice
cullingEnabled : DisplayDevice
curColor : GeomListStruct
curformat : FileRenderer
curframe : gofrparms_t
curpath : PluginMgr
curr_material() : Displayable
current : DrawMolecule, wkf_shared_iterator_struct
current_color_use() : AtomColor
current_pick_mode() : PickModeList
cursor : glxdata
CursorCodes : DisplayDevice
custom_singleword_name() : SymbolTable
cutoff : ComputeOccupancyMap_t, occthrparms_t
cx : glxdata
cycle_x : Msmpot_t
cycle_y : Msmpot_t
cycle_z : Msmpot_t
cylinder() : VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, POV3DisplayDevice, OpenGLRenderer, LibTachyonDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
CYLINDER : MoleculeGraphics
cylinderRes : DisplayDevice

- d -

d : VMDDIR
data : NameList< T >, VolumetricData, MsmpotLattice_t, inthash_node_t, hash_node_t, DispCmdDataBlock
Data : NameList< T >
dataBlock : OpenGLRenderer, FileRenderer
datamax : VolumetricData
datamin : VolumetricData
dataset : GraphicsFltkRepVolumetric
dataset_append() : GraphicsFltkRepVolumetric
dataset_clear() : GraphicsFltkRepVolumetric
dataset_flag : BaseMolecule
datasetflags : BaseMolecule
deactivate_materials() : FileRenderer
deactivate_uitext_stdin() : VMDApp
default_beta() : BaseMolecule
default_charge() : BaseMolecule
default_color() : MoleculeList
default_exec_string() : FileRenderer
default_filename() : FileRenderer
default_mass() : BaseMolecule
default_material() : MoleculeList
default_occup() : BaseMolecule
default_radius() : BaseMolecule
default_representation() : MoleculeList
default_selection() : MoleculeList
defaultColor : GeomListStruct
defaultCommandLine : FileRenderer
defaultFilename : FileRenderer
defcolor : CmdColorItem
define_light() : Scene
define_volume_texture() : TachyonDisplayDevice, LibTachyonDisplayDevice, FileRenderer
defValue : AtomRepDataInfo
deg : CmdRockOn, CmdRotate
del_all_molecules() : MoleculeList
del_geometry() : GeometryList
del_molecule() : MoleculeList
del_rep() : MoleculeList, DrawMolecule
delete_all() : MoleculeGraphics
delete_basis_set() : QMData
delete_frame() : DrawMolecule
delete_id() : MoleculeGraphics
delete_material() : MaterialList, Displayable
delete_tool() : ToolFltkMenu
deleteUnused() : OpenGLCache
delta : VolMapCreate, gofrparms_t
depthcue_set_density() : VMDApp
depthcue_set_end() : VMDApp
depthcue_set_mode() : VMDApp
depthcue_set_start() : VMDApp
DepthSortObject() : DepthSortObject
DETACH : CmdIMDSim
detach() : IMDSimThread, IMDSimBlocking, IMDSim, IMDMgr
dev : xidevhandle, MsmpotCuda_t
dev_binBase : MsmpotCuda_t
dev_binZero : MsmpotCuda_t
dev_dialbox : xinputhandle
dev_maxbins : MsmpotCuda_t
dev_maxpm : MsmpotCuda_t
dev_padEpotmap : MsmpotCuda_t
dev_spaceball : xinputhandle
device_canmaphostmem() : CUDAAccel
device_clock_ghz() : CUDAAccel
device_computemode() : CUDAAccel
device_egrids : MsmpotCuda_t
device_index() : CUDAAccel
device_kerneltimeoutenabled() : CUDAAccel
device_membytes() : CUDAAccel
device_name() : SpaceballTracker, SpaceballButtons, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, FreeVRTracker, FreeVRButtons, Feedback, CaveTracker, CaveButtons, Buttons, CUDAAccel
device_overlap() : CUDAAccel
device_qgrids : MsmpotCuda_t
device_sm_count() : CUDAAccel
device_version_major() : CUDAAccel
device_version_minor() : CUDAAccel
deviceid : globmembwthrparms, busbwthrparms, maddthrparms, cudadevprops
devid : wkf_threadpool_workerdata_struct
devlist : wkf_threadpool_struct
devnum : MsmpotCuda_t
devpool_launch() : CUDAAccel
devpool_wait() : CUDAAccel
devs : vmd_opencl_orbital_handle
devspeed : wkf_threadpool_workerdata_struct
dhlatusec : busbwthrparms
dhmbsec : busbwthrparms
diffuse : VMDDisplayList, Material
dihedrals : BaseMolecule
dihedralTypeNames : BaseMolecule
dihedralTypes : BaseMolecule
dim : VMDTracker
dimension() : VMDTracker, Tool
disable_stencil_stereo() : OpenGLRenderer
disconnect() : VMDCollab, IMDSim
DISP_ANTIALIAS : Command
DISP_AO : Command
DISP_AO_AMBIENT : Command
DISP_AO_DIRECT : Command
DISP_BACKGROUNDGRADIENT : Command
DISP_CACHEMODE : Command
DISP_CLIP : Command
DISP_CUEDENSITY : Command
DISP_CUEEND : Command
DISP_CUEMODE : Command
DISP_CUESTART : Command
DISP_CULLING : Command
DISP_DEPTHCUE : Command
DISP_EYESEP : Command
DISP_FOCALLEN : Command
DISP_FPS : Command
DISP_LIGHT_HL : Command
DISP_LIGHT_MOVE : Command
DISP_LIGHT_ON : Command
DISP_LIGHT_ROT : Command
DISP_PROJ : Command
DISP_RENDERMODE : Command
DISP_RESETVIEW : Command
DISP_SCRDIST : Command
DISP_SCRHEIGHT : Command
DISP_SHADOW : Command
DISP_STEREO : Command
DispCmdCylinder() : DispCmdCylinder
display : VMDApp
display_get_screen_distance() : VMDApp
display_get_screen_height() : VMDApp
display_get_size() : VMDApp
display_line() : GeometryMol
display_projection_is_perspective() : VMDApp
display_set_aa() : VMDApp
display_set_ao() : VMDApp
display_set_ao_ambient() : VMDApp
display_set_ao_direct() : VMDApp
display_set_background_mode() : VMDApp
display_set_cachemode() : VMDApp
display_set_culling() : VMDApp
display_set_depthcue() : VMDApp
display_set_eyesep() : VMDApp
display_set_farclip() : VMDApp
display_set_focallen() : VMDApp
display_set_fps() : VMDApp
display_set_nearclip() : VMDApp
display_set_position() : VMDApp
display_set_projection() : VMDApp
display_set_rendermode() : VMDApp
display_set_screen_distance() : VMDApp
display_set_screen_height() : VMDApp
display_set_shadows() : VMDApp
display_set_size() : VMDApp
display_set_stereo() : VMDApp
display_string() : GeometryMol
display_titlescreen() : VMDApp
display_update() : VMDApp
display_update_cb() : TextInterp
display_update_on() : VMDApp
display_update_status() : VMDApp
display_update_ui() : VMDApp
Displayable() : Displayable
DisplayColor() : DisplayColor
DisplayDevice() : DisplayDevice
displayed() : MoleculeList, Displayable
DisplayEye : DisplayDevice
DisplayFltkMenu() : DisplayFltkMenu
displaylistcache : OpenGLRenderer
DisplayRocker() : DisplayRocker
dist : DepthSortObject
distance_to_screen() : DisplayDevice
do_activate_light() : OpenGLRenderer, FileRenderer, DisplayDevice
do_callback() : PickSelectionEvent, GraphLabelEvent, LogfileEvent, HelpEvent, TimestepEvent, TrajectoryReadEvent, PickAtomCallbackEvent, PickGraphicsEvent, PickAtomEvent, PickValueEvent, SpaceballEvent, MousePositionEvent, MouseModeEvent, MoleculeEvent, InitializeStructureEvent, FrameEvent, PythonEvalEvent, TclEvalEvent, UserKeyEvent, InterpEvent
do_color_changed() : Stage, DisplayColor, GeometryList, FPS, DrawMolItem, DrawForce, Displayable, Axes
do_color_rgb_changed() : DisplayColor, DrawMolItem, Displayable
do_color_scale_changed() : DrawMolItem, Displayable
do_dataset_append() : GraphicsFltkRepVolumeSlice, GraphicsFltkRepIsosurface, GraphicsFltkRepVolumetric
do_dataset_clear() : GraphicsFltkRepVolumeSlice, GraphicsFltkRepIsosurface, GraphicsFltkRepVolumetric
do_define_light() : OpenGLRenderer, FileRenderer, DisplayDevice
do_dialog() : FrameSelector
do_event() : SpringTool, TugTool, Tool, RotateTool, PrintTool, PinchTool, JoystickTool, GrabTool
do_off() : VMDTkMenu, VMDTkinterMenu, VMDFltkMenu, UIObject
do_on() : VMDTkMenu, VMDTkinterMenu, VMDFltkMenu, UIObject
do_reposition_window() : OpenGLDisplayDevice, DisplayDevice
do_reset() : GraphicsFltkRepVolumeSlice, GraphicsFltkRepIsosurface, GraphicsFltkRepSurf, GraphicsFltkRepHBonds, GraphicsFltkRepMSMS, GraphicsFltkRepSolvent, GraphicsFltkRepNewCartoon, GraphicsFltkRepCartoon, GraphicsFltkRepNewRibbons, GraphicsFltkRepRibbons, GraphicsFltkRepLicorice, GraphicsFltkRepVDW, GraphicsFltkRepPoints, GraphicsFltkRepCPK, GraphicsFltkRepDynamicBonds, GraphicsFltkRepBonds, GraphicsFltkRepLines, GraphicsFltkRep
do_resize_window() : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice
do_save() : SaveTrajectoryFltkMenu
do_start() : SpaceballTracker, SpaceballButtons, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, FreeVRTracker, FreeVRButtons, Feedback, CaveTracker, CaveButtons, Buttons
do_update : AtomSel, AtomColor
do_use_colors() : FileRenderer, DisplayDevice
DoCell() : IsoSurface, IsoContour
doCent : Displayable
doEvent() : TextInterp, TclTextInterp, PythonTextInterp
doGlob : Displayable
dograb() : Tool
doInit() : TextInterp, TclTextInterp
DONE : CoorData
done_waiting() : TclTextInterp
doRot : Displayable
doScale : Displayable
doTkUpdate() : TextInterp, TclTextInterp, PythonTextInterp
DOTTED : AtomRep
double_fctn : SymbolTableElement
doublesided : DispCmdTriStrips
downshift : inthash_t, hash_t
dpl_initialized : OpenGLRenderer
dpy : glxdata, spaceballhandle, xinputhandle
dpyScreen : glxdata
draw() : Scene, MainFltkMenu, My_Fl_Positioner, myFl_Chart, FreeVRScene, myglwindow, Displayable, ColorscaleImage, CaveScene
draw_background_gradient() : OpenGLRenderer
draw_finished() : Scene
draw_prepare() : Displayable
DrawForce() : DrawForce
DrawMolecule() : DrawMolecule
DrawMoleculeMonitor() : DrawMoleculeMonitor
DrawMolItem() : DrawMolItem
DrawTool() : DrawTool
drv_win : spaceballhandle
dtool : Tool
dup() : Stack< T >
duplicate_frame() : DrawMolecule
dval : symbol_data, atomparser_node, YYSTYPE
dx : Msmpot_t
dy : Msmpot_t
DYNAMICBONDS : AtomRep
dz : Msmpot_t

- e -

Eangle : IMDEnergies
Ebond : IMDEnergies
Edihe : IMDEnergies
Eelec : IMDEnergies
eh : Msmpot_t
Eimpr : IMDEnergies
ELEMENT : AtomColor
element_id() : MoleculeGraphics
enable_stencil_stereo() : OpenGLRenderer
encache() : OpenGLCache
end : wkf_shared_iterator_struct, wkf_tasktile_struct
end_clipgroup() : TachyonDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, FileRenderer
end_match_ptr : match_data
end_offset_top : match_data
end_ring : LinkagePath
end_subject : match_data
endFrame : CoorPluginData, CmdAnimDelete, CmdAnimWriteFile
endonly : match_data
endtime : wkf_timer
energy : Timestep
entries : inthash_t, hash_t
Epot : IMDEnergies
epotmap : Msmpot_t
err : MSMSInterface
errcode : occthrparms_t
errorcode : match_data
errorstack : wkf_threadpool_struct, wkf_threadpool_workerdata_struct
Etot : IMDEnergies
ev_button_press : spaceballhandle
ev_button_release : spaceballhandle
ev_command : spaceballhandle
ev_motion : spaceballhandle
evalFile() : TextInterp, TclTextInterp, PythonTextInterp
evalString() : TextInterp, TclTextInterp, PythonTextInterp, PlainTextInterp
evaluate() : ParseTree
evaluate_grid_point() : Orbital
evclasses : xidevhandle
Evdw : IMDEnergies
event : spaceballevent
EventCodes : DisplayDevice
exci : wavef_signa_t
excl_dist : ComputeOccupancyMap_t
excl_energy : ComputeOccupancyMap_t
exclusions : ComputeOccupancyMap_t
execCmd : FileRenderer
execute_all() : CommandQueue
exists : vmdwinjoystick
exitFlag : VMDApp
expon : prim_t
ext : OpenGLShader, OpenGLRenderer
extcmd : CmdRender
extcutoff : ComputeOccupancyMap_t
extension() : MolFilePlugin
extra : ComputeOccupancyMap_t, occthrparms_t
extra_atom : MsmpotCuda_t
extra_type : atomparser_node
extraflt : BaseMolecule
extraint : BaseMolecule
eye_dist() : DisplayDevice
eyeDir : DisplayDevice
eyeDist : DisplayDevice
eyePos : DisplayDevice
eyeSep : DisplayDevice
eyesep() : DisplayDevice
eyeSepDir : DisplayDevice
eyzd : Msmpot_t
ezd : Msmpot_t

- f -

f : Surf, IsoSurface, IsoContour, flint_t
faces : MSMSInterface
far_clip() : DisplayDevice
farClip : DisplayDevice
fatalerror : wkf_shared_iterator_struct
fcc : compile_data
fctn : wkf_run_barrier_struct, SymbolTableElement
fctns : SymbolTable
Feedback() : Feedback
file_in_progress() : Molecule
filebonds : FileSpec
FileChooserFltkMenu() : FileChooserFltkMenu
filedraw() : Scene
filename : CmdRender
fileName : CmdAnimWriteFile
filerender_aasamples() : VMDApp
filerender_aosamples() : VMDApp
filerender_aspectratio() : VMDApp
filerender_cur_format() : VMDApp
filerender_default_filename() : VMDApp
filerender_default_option() : VMDApp
filerender_get_format() : VMDApp
filerender_has_antialiasing() : VMDApp
filerender_has_imagesize() : VMDApp
filerender_imagesize() : VMDApp
filerender_name() : VMDApp
filerender_num() : VMDApp
filerender_numformats() : VMDApp
filerender_option() : VMDApp
filerender_render() : VMDApp
filerender_set_format() : VMDApp
filerender_valid() : VMDApp
FileRenderer() : FileRenderer
FileRenderList() : FileRenderList
FileSpec() : FileSpec
fileType : CmdAnimWriteFile
find() : ResizeArray< T >, FileRenderList, IdList, AtomColor
find_3D_from_2D() : OpenGLRenderer, DisplayDevice
find_atom_in_residue() : BaseMolecule
find_attribute() : SymbolTable
find_bonds_from_timestep() : BaseMolecule
find_extensions() : OpenGLExtensions
find_optimal_grid() : Orbital
find_pbc_cells() : DisplayDevice
find_pbc_images() : DisplayDevice
find_recursion() : ParseTree
find_renderer() : OpenGLExtensions
find_unique_bonds_from_timestep() : BaseMolecule
find_wavef_id_from_gui_specs() : QMData
findAtomBox() : AtomGrid
findAtomsGrid() : MolData
FindWithinData() : FindWithinData
first : VMDDisplayList, FileSpec
first_atom() : SmallRing
first_atom_index : Msmpot_t
first_cb() : FrameSelector
first_char : real_pcre
firstvalue : FrameSelector
fix() : MoleculeList, Displayable
fixed() : MoleculeList, Displayable
flgatoms : FindWithinData
flgs : FindWithinData
flops_per_gridpoint() : Orbital
FltkOpenGLDisplayDevice() : FltkOpenGLDisplayDevice
fontListBase : OpenGLRenderer
force : Timestep
force_recalc() : DrawMolItem, DrawMolecule
FORCEATOM : PickModeList, Mouse
forced_stereo_draws() : OpenGLRenderer, DisplayDevice
FORCEFRAG : PickModeList, Mouse
forceoff() : VRPNFeedback, Tool, Feedback
FORCERES : PickModeList, Mouse
forcescale : Tool
format : FileRenderList, FileRenderer, CmdLabelTextFormat
formats : FileRenderer
forward : RibbonFrame
fps : VMDApp
FPS() : FPS
fragList : BaseMolecule
Fragment() : Fragment
fragment : BaseMolecule, Residue
FragmentShaderObject : OpenGLShader
frame() : DrawMolecule, Animation
frame_cb() : TextInterp, TclTextInterp, PythonTextInterp
FrameEvent() : FrameEvent
FrameSelector() : FrameSelector
frameSkip : CoorPluginData, CmdAnimDelete, CmdAnimWriteFile
framespec : CmdMolDrawFrames
free_opengl_ctx() : OpenGLRenderer
FreeVRButtons() : FreeVRButtons
FreeVRDisplayDevice() : FreeVRDisplayDevice
FreeVRScene() : FreeVRScene
FreeVRTracker() : FreeVRTracker
freeze() : VMDMenu
fromMatrix() : Quat
FUNCTION : SymbolTableElement

- g -

g : GRIDCELL
gamma : Timestep
gc : Msmpot_t
GelatoDisplayDevice() : GelatoDisplayDevice
generateChargeTexture() : VolumeTexture
generateColorScaleTexture() : VolumeTexture
generateContourLineTexture() : VolumeTexture
generateHSVTexture() : VolumeTexture
generateIndexTexture() : VolumeTexture
generatePosTexture() : VolumeTexture
GENERIC : OpenGLExtensions
geom_list() : GeometryList
geom_list_index() : GeometryList
geom_list_name() : GeometryList
geom_set_name() : GeometryMol
geometry : QMData
GeometryAngle() : GeometryAngle
GeometryAtom() : GeometryAtom
GeometryBond() : GeometryBond
GeometryDihedral() : GeometryDihedral
GeometryFltkMenu() : GeometryFltkMenu
geometryList : VMDApp
GeometryList() : GeometryList
GeometryMol() : GeometryMol
GeometryMonitor() : GeometryMonitor
GeometrySpring() : GeometrySpring
geomList : GeomListStruct
geomValue : GeometryMol
get() : Combinations, AtomGrid, AtomGridCell, GridList, IndexList
get_accession() : Molecule
get_additional_elements() : Symmetry
get_ambient() : MaterialList
get_angletype() : BaseMolecule
get_angular_momentum() : QMData
get_angular_momentum_str() : QMData
get_ao_ambient() : DisplayDevice
get_ao_direct() : DisplayDevice
get_atom_types() : QMData
get_avail_occupancies() : QMData
get_avail_orbitals() : QMData
get_axisorder() : Symmetry
get_axistype() : Symmetry
get_basis() : QMData
get_button_names() : UIVR
get_buttons() : Tool
get_carthessian() : QMData
get_category_item() : Scene
get_cell() : AtomGrid
get_charge_set() : QMTimestep
get_charge_type() : QMTimestep
get_charge_type_str() : QMTimestep
get_cijk() : AtomGrid
get_cna() : AtomGrid
get_cnb() : AtomGrid
get_cnc() : AtomGrid
get_coeffs() : Wavefunction
get_colorscale_colors() : VMDApp, Scene
get_colorscale_minmax() : AtomColor
get_component_by_name() : DrawMolecule
get_component_name() : DrawMolecule
get_conformers() : VolMapCreateILS
get_copyunitcell() : IMDMgr
get_cuda_devpool() : CUDAAccel
get_cue_density() : DisplayDevice
get_cue_end() : DisplayDevice
get_cue_mode() : DisplayDevice
get_cue_start() : DisplayDevice
get_custom_singleword() : SymbolTable
get_data() : AtomRep
get_database() : Molecule
get_device_names() : UIVR
get_diffuse() : MaterialList
get_dihedraltype() : BaseMolecule
get_drawframes() : DrawMolItem
get_element_summary() : Symmetry
get_eofexit() : VMDApp
get_excitation() : QMTimestep
get_eye_dir() : DisplayDevice
get_eye_pos() : DisplayDevice
get_eye_up() : DisplayDevice
get_feedback() : Tool
get_feedback_names() : UIVR
get_file() : Molecule
get_file_specs() : Molecule
get_force() : PickModeForce
get_frame() : DrawMolecule
get_frame_value() : AtomSel
get_gradients() : QMTimestep
get_grid_axes() : Orbital
get_grid_data() : Orbital
get_gridsize() : Orbital
get_highest_excitation() : QMData
get_homo() : QMTimestep
get_ijk() : AtomGrid
get_imagmodes() : QMData
get_imdmol() : IMDMgr
get_impropertype() : BaseMolecule
get_inertia_axes() : Symmetry
get_inertia_eigenvals() : Symmetry
get_inertia_unique() : Symmetry
get_intensities() : QMData
get_interp() : TclTextInterp
get_inthessian() : QMData
get_keep_rate() : IMDMgr
get_last_frame() : DrawMolecule
get_link_key() : SmallRingLinkages
get_list() : AtomGridCell
get_lumo() : QMTimestep
get_max_avail_orbitals() : QMData
get_maxforce() : Feedback
get_missing_elements() : Symmetry
get_mode_str() : Spaceball, Mouse
get_multiplicity() : QMTimestep
get_na() : AtomGrid
get_name() : VMDMenu
get_nb() : AtomGrid
get_nc() : AtomGrid
get_new_frames() : Molecule
get_next_ts() : IMDSimThread, IMDSimBlocking, IMDSim
get_normalmodes() : QMData
get_num_atoms() : QMData
get_num_charge_sets() : QMTimestep
get_num_coeffs() : QMTimestep, Wavefunction
get_num_imag() : QMData
get_num_intcoords() : QMData
get_num_orbitals() : QMTimestep, Wavefunction
get_num_prim_per_shell() : QMData
get_num_processes() : DisplayDevice
get_num_scfiter() : QMTimestep
get_num_shells() : QMData
get_num_shells_per_atom() : QMData
get_num_types() : QMData
get_num_wavef() : QMTimestep
get_numvoxels() : Orbital
get_occupancies() : QMTimestep, Wavefunction
get_offset() : VMDTracker
get_opacity() : MaterialList
get_orbenergies() : Wavefunction
get_orbids() : Wavefunction
get_orbital_id_from_index() : QMTimestep
get_orbital_index_from_id() : QMTimestep
get_orbital_label_from_gui_index() : QMData
get_orbital_occ_energy() : QMTimestep
get_orbitalenergy() : QMTimestep, Wavefunction
get_orbitalids() : QMTimestep
get_orientation() : Symmetry
get_origin() : Orbital
get_outline() : MaterialList
get_outlinewidth() : MaterialList
get_pbc() : DrawMolItem
get_pbc_images() : DrawMolItem
get_planetype() : Symmetry
get_plugin() : VMDApp
get_pointgroup() : Symmetry
get_projection() : DisplayDevice
get_remarks() : Molecule
get_rep_molid() : Tool
get_rep_name() : Tool
get_repserialnum() : VMDApp
get_resolution() : Orbital
get_rmsd() : Symmetry
get_rotreflectorder() : Symmetry
get_rotrefltype() : Symmetry
get_runtype_string() : QMData
get_scale() : VMDTracker
get_scfenergies() : QMTimestep
get_scftype_string() : QMData
get_shell_type_str() : QMData
get_shininess() : MaterialList
get_smoothing() : DrawMolItem
get_specular() : MaterialList
get_spin() : QMTimestep
get_statistics() : VolMapCreateILS
get_status_string() : QMData
get_targeted_atom() : Tool
get_tcl_interp() : UIText
get_texserialnum() : VMDApp
get_text() : VMDApp
get_tracker() : Tool
get_tracker_names() : UIVR
get_tracker_status() : Spaceball
get_trans_rate() : IMDMgr
get_transform_from_cell() : Timestep
get_transform_vectors() : Timestep
get_transforms() : Timestep
get_type() : Wavefunction, Molecule
get_typestr() : Wavefunction
get_unique_atom() : Symmetry
get_volmap() : VolMapCreateILS
get_volume_data() : BaseMolecule
get_wave_energy() : QMTimestep
get_wave_offset() : QMData
get_wavecoeffs() : QMTimestep
get_wavef_index() : QMTimestep
get_wavef_typestr() : QMTimestep
get_wavefunction() : QMTimestep
get_waveid() : QMTimestep
get_wavenumbers() : QMData
get_xyz() : AtomGrid
getActualRadius() : MolData
getbondorder() : BaseMolecule
getbondtype() : BaseMolecule
getdevice() : SensorConfig
getdevices() : Tool
getforcescale() : Tool
gethost() : IMDMgr
getleft_rot() : SensorConfig
getLinkageEdge() : SmallRingLinkages
getmaxforce() : SensorConfig
getname() : SensorConfig
getnames() : SensorConfig
getNum() : GridList
getnums() : SensorConfig
getoffset() : Tool, SensorConfig
getplace() : SensorConfig
getpointers() : DispCmdPickPointIndexArray, DispCmdWireMesh, DispCmdTriStrips, DispCmdTriMesh, DispCmdLitPointArray, DispCmdPointArray, DispCmdSphereArray
getport() : IMDMgr
getRadius() : MolData
getright_rot() : SensorConfig
getscale() : Tool, SensorConfig
getsensors() : SensorConfig
getSimState() : IMDSim
getspringscale() : Tool
getTargetScale() : Tool
getTextFormat() : GeometryList
getTextOffset() : GeometryList
getTextSize() : GeometryList
getTextureID() : VolumeTexture
getTextureMap() : VolumeTexture
getTextureSize() : VolumeTexture
gettool() : UIVR
gettype() : SensorConfig, Command
getUSL() : SensorConfig
gflops : maddthrparms
GLenum : OpenGLExtensions
GLfloat : OpenGLExtensions
GLint : OpenGLExtensions
glob_trans_off() : Displayable
glob_trans_on() : Displayable
glob_translating() : Displayable
globt : Displayable
GLsizei : OpenGLExtensions
glxsrv : OpenGLDisplayDevice
gmName : GeometryMol
goto_frame() : Animation
grabs : Tool
GrabTool() : GrabTool
gradient : VolumetricData
graph_label_cb() : TextInterp, TclTextInterp
GraphicsFltkMenu() : GraphicsFltkMenu
GraphicsFltkRep() : GraphicsFltkRep
GraphicsFltkRepBeads() : GraphicsFltkRepBeads
GraphicsFltkRepBonds() : GraphicsFltkRepBonds
GraphicsFltkRepCartoon() : GraphicsFltkRepCartoon
GraphicsFltkRepCPK() : GraphicsFltkRepCPK
GraphicsFltkRepDotted() : GraphicsFltkRepDotted
GraphicsFltkRepDynamicBonds() : GraphicsFltkRepDynamicBonds
GraphicsFltkRepHBonds() : GraphicsFltkRepHBonds
GraphicsFltkRepIsosurface() : GraphicsFltkRepIsosurface
GraphicsFltkRepLicorice() : GraphicsFltkRepLicorice
GraphicsFltkRepLines() : GraphicsFltkRepLines
GraphicsFltkRepMSMS() : GraphicsFltkRepMSMS
GraphicsFltkRepNewCartoon() : GraphicsFltkRepNewCartoon
GraphicsFltkRepNewRibbons() : GraphicsFltkRepNewRibbons
GraphicsFltkRepPoints() : GraphicsFltkRepPoints
GraphicsFltkRepRibbons() : GraphicsFltkRepRibbons
GraphicsFltkRepSolvent() : GraphicsFltkRepSolvent
GraphicsFltkRepSurf() : GraphicsFltkRepSurf
GraphicsFltkRepTrace() : GraphicsFltkRepTrace
GraphicsFltkRepTube() : GraphicsFltkRepTube
GraphicsFltkRepVDW() : GraphicsFltkRepVDW
GraphicsFltkRepVolumeSlice() : GraphicsFltkRepVolumeSlice
GraphicsFltkRepVolumetric() : GraphicsFltkRepVolumetric
GraphLabelEvent() : GraphLabelEvent
grideners : enthrparms
GridList() : GridList
GridResCounter() : GridResCounter
gridsize() : VolumetricData
GRIDSPACING : AtomRep
gridspacing : MolData, enthrparms
growthrate : wkf_tasktile_stack_struct, intstack
gsub() : JString
guess() : Symmetry
guess_filetype() : VMDApp

- h -

handle() : MolBrowser, myBrowser, myglwindow
handlelist : PluginMgr
has_aa : FileRenderer
has_antialiasing() : FileRenderList, FileRenderer
has_imagesize() : FileRenderList, FileRenderer
has_imgsize : FileRenderer
has_inversion() : Symmetry
has_orbital() : QMData
has_structure() : BaseMolecule
has_text() : Command
has_value() : GeometryMol
has_wavef_exci() : QMData
has_wavef_signa() : QMData
has_wavef_spin() : QMData
has_wavef_type() : QMData
hascompiledvertexarrayext : OpenGLExtensions
hasglarbtexnonpoweroftwo : OpenGLExtensions
hasglfragmentshaderarb : OpenGLExtensions
hasglpointparametersext : OpenGLExtensions
hasglpointspritearb : OpenGLExtensions
hasglshaderobjectsarb : OpenGLExtensions
hasglshadinglangarb : OpenGLExtensions
hasglvertexshaderarb : OpenGLExtensions
hash : NameList< T >
hasmultidrawext : OpenGLExtensions
hasmultisample : OpenGLExtensions
hasrescalenormalext : OpenGLExtensions
hasstencilbuffer : OpenGLExtensions
hasstereo : OpenGLExtensions
hastex2d : OpenGLRenderer, OpenGLExtensions
hastex3d : OpenGLRenderer, OpenGLExtensions
hasValue : GeometryMol
have_one_sensor() : SensorConfig
have_window : OpenGLDisplayDevice
havefocus : glxdata
HBONDS : AtomRep
hdlatusec : busbwthrparms
hdmbsec : busbwthrparms
head : bondsearchthrparms
help_cb() : TextInterp, TclTextInterp
HelpEvent() : HelpEvent
hide() : MoleculeList, myglwindow
high : netint
highest : netint
highlight_light() : Scene
highlighted_molid : VMDApp
highlighted_rep : DrawMolecule, VMDApp
hlist : gofrparms_t
hminx : Msmpot_t
hminy : Msmpot_t
hminz : Msmpot_t
host : CmdIMDConnect
host_egrids : MsmpotCuda_t
host_lfac : MsmpotCuda_t
host_qgrids : MsmpotCuda_t
host_sinfo : MsmpotCuda_t
host_wt : MsmpotCuda_t
hx : ComputeOccupancyMap_t, Msmpot_t, occthrparms_t
hx_dx : Msmpot_t
hy : ComputeOccupancyMap_t, Msmpot_t, occthrparms_t
hy_dy : Msmpot_t
hz : ComputeOccupancyMap_t, Msmpot_t, occthrparms_t
hz_dz : Msmpot_t

- i -

i : flint_t
ia : MsmpotLattice_t
ib : MsmpotLattice_t
ID : DispCmdVolumeTexture
id() : Tool, BaseMolecule
idealcoor : Best
idealpos() : Symmetry
identity() : Quat, Matrix4
IdList() : IdList
ilist : gofrparms_t
imagesize() : FileRenderList
IMD_ATTACH : Command
imd_connect() : VMDApp
imd_connected() : VMDApp
IMD_COPYUNITCELL : Command
imd_disconnect() : VMDApp
IMD_RATE : Command
imd_sendforces() : VMDApp
IMD_SIM : Command
imdMgr : VMDApp
IMDMgr() : IMDMgr
IMDOFFLINE : IMDSim
IMDPAUSED : IMDSim
IMDRUNNING : IMDSim
IMDSim() : IMDSim
IMDSimBlocking() : IMDSimBlocking
IMDSimThread() : IMDSimThread
IMDSTARTING : IMDSim
IMDStates : IMDSim
imgheight : FileRenderer
imgwidth : FileRenderer
immersadeskflip : OpenGLRenderer
impose() : Symmetry
impropers : BaseMolecule
improperTypeNames : BaseMolecule
improperTypes : BaseMolecule
inactivate() : MoleculeList
ind : Surf, Material, CmdMaterialDefault
ind1 : GridSearchPair
ind2 : GridSearchPair
INDEX : AtomColor
index : AtomEntry, iterobject, AtomData, AtomRepDataInfo
index_id() : MoleculeGraphics
IndexList() : IndexList
info : vmdwinjoystick, wavef_signa_t
info_id() : MoleculeGraphics
Inform() : Inform
init() : OpenGLDisplayDevice, DisplayDevice, MolAtom
init_angular_norm_factors() : QMData
init_atoms() : BaseMolecule
init_basis() : QMData
init_colorchooser() : GraphicsFltkMenu
init_colors() : MoleculeList
init_electrons() : QMData
init_materialchooser() : GraphicsFltkMenu
init_read() : MolFilePlugin
init_stylechooser() : GraphicsFltkMenu
init_write() : MolFilePlugin
initialize_structure_cb() : TextInterp, TclTextInterp, PythonTextInterp
InitializeStructureEvent() : InitializeStructureEvent
INSERTION : BaseMolecule
insertionstr : MolAtom
inStereo : DisplayDevice
int_fctn : SymbolTableElement
interp : VMDTkMenu, Msmpot_t
INTERP_EVENT : Command
InterpEvent() : InterpEvent
inv : elementsummary
inv_cellen : Msmpot_t
invalidate_ss() : DrawMolecule
invbinlen : MsmpotCuda_t
inverse() : Matrix4
inversion : Best
invert() : Quat
is_a : SymbolTableElement
is_changeable() : SymbolTable
IS_FLOAT : SymbolTableElement
is_input : CoorPluginData
IS_INT : SymbolTableElement
is_orbital() : GraphicsFltkRep, AtomRep
is_renderer_process() : DisplayDevice
is_spherical_top() : Symmetry
IS_STRING : SymbolTableElement
is_symmetric_top() : Symmetry
is_targeted() : Tool
is_top() : MoleculeList
is_volumetric() : GraphicsFltkRepVolumetric, GraphicsFltkRep, AtomRep
isConnected() : IMDSim
isFixed : Displayable
isgrabbing() : SpringTool, TugTool, Tool, RotateTool, PinchTool
IsoContour() : IsoContour
ISOLINETHICKNESS : AtomRep
isOn : Displayable
isOpened : FileRenderer
isorep : isosurface_cbdata
isort() : SortableArray< T >
IsoSlider() : IsoSlider
ISOSTEPSIZE : AtomRep
IsoSurface() : IsoSurface
ISOSURFACE : AtomRep
ispx : Msmpot_t
ispy : Msmpot_t
ispz : Msmpot_t
isvalid : OpenGLShader
item() : SortableArray< T >
items() : GeometryMol
iter : wkf_threadlaunch_struct, wkf_threadpool_struct, wkf_threadpool_workerdata_struct
ival : symbol_data, atomparser_node, YYSTYPE

- j -

ja : MsmpotLattice_t
jb : MsmpotLattice_t
JoystickTool() : JoystickTool
JRegex() : JRegex
JString() : JString

- k -

k : Combinations
ka : MsmpotLattice_t
kb : MsmpotLattice_t
kbytesperframe : CoorPluginData
kconstmem : vmd_opencl_orbital_handle
kconstmem_vec4 : vmd_opencl_orbital_handle
KEEP : CmdIMDRate
kernelexectimeoutenabled : cudadevprops
key : inthash_node_t, hash_node_t
KEYWORD : SymbolTableElement
keyword_double : SymbolTableElement
keyword_int : SymbolTableElement
keyword_single : SymbolTableElement
keyword_string : SymbolTableElement
keyword_stringfctn : SymbolTableElement
kill() : Tool, IMDSimThread, IMDSimBlocking, IMDSim, IMDMgr
KILL : CmdIMDSim
kstart : ComputeOccupancyMap_t
kstop : ComputeOccupancyMap_t
ktiledshared : vmd_opencl_orbital_handle

- l -

label_add() : VMDApp
LABEL_ADD : Command
LABEL_ADDSPRING : Command
label_delete() : VMDApp
LABEL_DELETE : Command
label_get_textsize() : VMDApp
label_set_textformat() : VMDApp
label_set_textoffset() : VMDApp
label_set_textsize() : VMDApp
label_show() : VMDApp
LABEL_SHOW : Command
LABEL_TEXTFORMAT : Command
LABEL_TEXTOFFSET : Command
LABEL_TEXTSIZE : Command
LABELANGLE : PickModeList, Mouse
LABELATOM : PickModeList, Mouse
LABELBOND : PickModeList, Mouse
LABELDIHEDRAL : PickModeList, Mouse
last : FileSpec
last_atom() : SmallRing
last_cb() : FrameSelector
lastbtn : FltkOpenGLDisplayDevice
lastevent : FltkOpenGLDisplayDevice
lastres : DispCmdCylinder
lastshader : OpenGLShader
lastvalue : FrameSelector
lastzdelta : FltkOpenGLDisplayDevice
lcc : match_data, compile_data
left : OpenGLRenderer, DisplayDevice, atomparser_node
left_atom : LinkageEdge
LEFTEYE : DisplayDevice
length : Vector3D, JString, bondlist, bond, IMDheader
length2() : Vector3D
let_go() : Tool
LibGelatoDisplayDevice() : LibGelatoDisplayDevice
LibTachyonDisplayDevice() : LibTachyonDisplayDevice
LICORICE : AtomRep
LIGHT : Mouse
light_active() : Scene
light_color() : Scene
light_color_default() : Scene
light_highlight() : VMDApp
light_highlighted() : Scene
light_move() : VMDApp
light_on() : VMDApp
light_pos() : Scene
light_pos_default() : Scene
light_rotate() : VMDApp
light_scale : DepthSortObject
lightState : FileRenderer
LINE : MoleculeGraphics
line() : WavefrontDisplayDevice, VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
linear : Best
LINES : AtomRep
lineStyle : FileRenderer, DisplayDevice
LINETHICKNESS : AtomRep
lineWidth : FileRenderer, DisplayDevice
LinkageEdge() : LinkageEdge
LinkagePath() : LinkagePath
links : SmallRingLinkages
list_plugins() : VMDApp
lk_nlevels : MsmpotCuda_t
lk_padding : MsmpotCuda_t
lk_srad : MsmpotCuda_t
lm : hersheyhandle
load() : VrmlDisplayDevice, Vrml2DisplayDevice, FileRenderer
load_sharedlibrary_plugins() : PluginMgr
load_static_plugins() : PluginMgr
loadmatrix() : OpenGLRenderer, Matrix4, DisplayDevice
LoadShader() : OpenGLShader
loc_description() : Stage, Axes
location() : Stage, Axes
locations() : Stage, Axes
lock : wkf_run_barrier_struct
logfile_cb() : TextInterp, TclTextInterp
logfile_read() : VMDApp
LogfileEvent() : LogfileEvent
lookat() : Matrix4
low : netint
lowest : netint
lx : ComputeOccupancyMap_t, Msmpot_t
ly : ComputeOccupancyMap_t, Msmpot_t
lz : ComputeOccupancyMap_t, Msmpot_t

- m -

m_x : CmdLabelTextOffset
m_y : CmdLabelTextOffset
magic_number : real_pcre
MainFltkMenu() : MainFltkMenu
major : cudadevprops
make_callbacks : UIObject
make_top() : MoleculeList
make_vrpn_address() : SensorConfig
map : ComputeOccupancyMap_t, occthrparms_t
markUnused() : OpenGLCache
markUsed() : OpenGLCache
mask : inthash_t, hash_t
mass() : BaseMolecule
MASS : BaseMolecule, AtomColor
mat : VMDDisplayList, Matrix4, CmdMolMaterial
MAT : CmdMolChangeRepItem
mat_ambient : FileRenderer
mat_diffuse : FileRenderer
mat_opacity : FileRenderer
mat_outline : FileRenderer
mat_outlinewidth : FileRenderer
mat_shininess : FileRenderer
mat_specular : FileRenderer
match() : JRegex
matcounter : MaterialList
matData : FileRenderer
MATERIAL : MoleculeGraphics
material() : MoleculeList, MaterialList
material_add() : VMDApp
MATERIAL_ADD : Command
material_change() : VMDApp
MATERIAL_CHANGE : Command
MATERIAL_DEFAULT : Command
material_delete() : VMDApp
MATERIAL_DELETE : Command
material_index() : MaterialList
material_name() : MaterialList
material_rename() : VMDApp
MATERIAL_RENAME : Command
material_restore_default() : VMDApp
MaterialFltkMenu() : MaterialFltkMenu
materialIndex : FileRenderer
materialList : VMDApp
MaterialList() : MaterialList
MATERIALS : MoleculeGraphics
materials_on : FileRenderer
materialtag : VMDDisplayList
matlist : ctxt
Matrix4() : Matrix4
max : ColorScale, CmdColorScaleSettings
max2DtexSize : OpenGLRenderer
max2DtexX : OpenGLRenderer
max2DtexY : OpenGLRenderer
max3DtexSize : OpenGLRenderer
max3DtexX : OpenGLRenderer
max3DtexY : OpenGLRenderer
max3DtexZ : OpenGLRenderer
max_avail_orbs : wavef_signa_t
max_children : Displayable
max_coord : VolMapCreate
max_dist : VolMapCreateDistance
max_energy : occthrparms_t
max_eyzd : Msmpot_t
max_ezd : Msmpot_t
max_phi_x : Msmpot_t
max_phi_y : Msmpot_t
max_phi_z : Msmpot_t
max_primitives() : Orbital
max_shell_type() : Orbital
max_stack_size() : Stack< T >
max_wave_f_count() : Orbital
maxatoms : Msmpot_t
MAXAXIS : Spaceball
maxbins : MsmpotCuda_t
maxcells : Msmpot_t
maxforce : Feedback
maxframe : gofrparms_t, FrameSelector
maxgridpts : MsmpotCuda_t
maxlevels : Msmpot_t, MsmpotCuda_t
maxpairs : bondsearchthrparms
maxpm : MsmpotCuda_t
maxval : GraphicsFltkRepVolumetric::minmax
maxwts : MsmpotCuda_t
membytes : cudadevprops
memcpygbsec : globmembwthrparms
memory : QMData
memsetgbsec : globmembwthrparms
menu_add_extension() : VMDApp
menu_location() : VMDApp
menu_move() : VMDApp
menu_name() : VMDApp
menu_remove_extension() : VMDApp
menu_select_mol() : VMDApp
menu_show() : VMDApp
MENU_SHOW : Command
menu_status() : VMDApp
MENU_TK_ADD : Command
MENU_TK_REMOVE : Command
menuname : CmdMenuShow
menupath : CmdMenuExtensionAdd
MESAGL : OpenGLExtensions
messagelabel : FrameSelector
method : AtomRep, AtomColor, CmdRenderOption, CmdRender, CmdColorScaleColors, CmdColorScaleMethod
mid : ColorScale, CmdColorScaleSettings
min : ColorScale, CmdColorScaleSettings
min_coord : VolMapCreate
min_excldist : occthrparms_t
minmax() : GraphicsFltkRepVolumetric::minmax
minmaxlist : GraphicsFltkRepVolumetric
minor : cudadevprops
minval : GraphicsFltkRepVolumetric::minmax
mlist : ctxt, MaterialList
mode : VMDClipPlane
MOL_ACTIVE : Command
MOL_ADDREP : Command
MOL_BONDRECALC : Command
MOL_CANCEL : Command
MOL_COLOR : Command
MOL_DEL : Command
MOL_DELETE : MoleculeEvent
MOL_DELREP : Command
MOL_DRAWFRAMES : Command
MOL_FIX : Command
mol_from_id() : MoleculeList
mol_index_from_id() : MoleculeList
MOL_MATERIAL : Command
MOL_MODREP : Command
MOL_MODREPITEM : Command
MOL_NEW : MoleculeEvent, Command
MOL_NUMPERIODIC : Command
MOL_ON : Command
MOL_REANALYZE : Command
MOL_REGEN : MoleculeEvent, DrawMolItem
MOL_RENAME : MoleculeEvent, Command
MOL_REP : Command
MOL_REPCOLORUPDATE : Command
MOL_REPSELUPDATE : Command
MOL_SCALEMINMAX : Command
MOL_SELECT : Command
MOL_SHOWPERIODIC : Command
MOL_SHOWREP : Command
MOL_SMOOTHREP : Command
MOL_SSRECALC : Command
MOL_TOP : Command
MOL_VOLUME : Command
MolBrowser : MolBrowser, MainFltkMenu
molchooser_activate_selection() : SaveTrajectoryFltkMenu
MolData() : MolData
Molecule() : Molecule
molecule() : MoleculeList
MOLECULE : AtomColor
molecule_activate() : VMDApp
molecule_add_volumetric() : VMDApp
molecule_addrep() : VMDApp
molecule_bondsrecalc() : VMDApp
molecule_cancel_io() : VMDApp
molecule_changed_cb() : TextInterp, TclTextInterp, PythonTextInterp
molecule_delete() : VMDApp
molecule_delete_all() : VMDApp
molecule_deleteframes() : VMDApp
molecule_display() : VMDApp
molecule_dupframe() : VMDApp
molecule_fix() : VMDApp
molecule_frame() : VMDApp
molecule_get_color() : VMDApp
molecule_get_material() : VMDApp
molecule_get_selection() : VMDApp
molecule_get_style() : VMDApp
molecule_id() : VMDApp
molecule_is_active() : VMDApp
molecule_is_displayed() : VMDApp
molecule_is_fixed() : VMDApp
molecule_load() : VMDApp
molecule_make_top() : VMDApp
molecule_modrep() : VMDApp
molecule_name() : VMDApp
molecule_new() : VMDApp
molecule_numatoms() : VMDApp
molecule_numframes() : VMDApp
molecule_reanalyze() : VMDApp
molecule_rename() : VMDApp
molecule_savetrajectory() : VMDApp
molecule_set_color() : VMDApp
molecule_set_dataset_flag() : VMDApp
molecule_set_material() : VMDApp
molecule_set_selection() : VMDApp
molecule_set_style() : VMDApp
molecule_ssrecalc() : VMDApp
molecule_top() : VMDApp
molecule_valid_id() : VMDApp
MoleculeEvent() : MoleculeEvent
moleculeGraphics() : DrawMolecule
MoleculeGraphics() : MoleculeGraphics
moleculeList : VMDApp
MoleculeList() : MoleculeList
moleculename : BaseMolecule
MolEvent : MoleculeEvent
MolFilePlugin() : MolFilePlugin
molid : AtomSel, CmdToolRep, GeometryMonitor, CmdMolLoad, CmdIMDConnect
molindex : GraphicsFltkMenu
molinfo_frame_number : ctxt
molinfo_get_id : ctxt
molinfo_get_index : ctxt
molinfo_get_string : ctxt
molList : GeometryMol
molname() : BaseMolecule
molnamelabel : FrameSelector
molrep_delete() : VMDApp
molrep_get_by_name() : VMDApp
molrep_get_clipplane() : VMDApp
molrep_get_color() : VMDApp
molrep_get_colorupdate() : VMDApp
molrep_get_drawframes() : VMDApp
molrep_get_material() : VMDApp
molrep_get_name() : VMDApp
molrep_get_pbc() : VMDApp
molrep_get_pbc_images() : VMDApp
molrep_get_scaleminmax() : VMDApp
molrep_get_selection() : VMDApp
molrep_get_selupdate() : VMDApp
molrep_get_smoothing() : VMDApp
molrep_get_style() : VMDApp
molrep_is_shown() : VMDApp
molrep_numselected() : VMDApp
molrep_reset_scaleminmax() : VMDApp
molrep_set_clipcenter() : VMDApp
molrep_set_clipcolor() : VMDApp
molrep_set_clipnormal() : VMDApp
molrep_set_clipstatus() : VMDApp
molrep_set_color() : VMDApp
molrep_set_colorupdate() : VMDApp
molrep_set_drawframes() : VMDApp
molrep_set_material() : VMDApp
molrep_set_pbc() : VMDApp
molrep_set_pbc_images() : VMDApp
molrep_set_scaleminmax() : VMDApp
molrep_set_selection() : VMDApp
molrep_set_selupdate() : VMDApp
molrep_set_smoothing() : VMDApp
molrep_set_style() : VMDApp
molrep_show() : VMDApp
monitors : GeometryMol
motionevent : xidevhandle
motioneventclass : xidevhandle
Mouse() : Mouse
MOUSE_MODE : Command
mouse_pos_cb() : TextInterp, TclTextInterp
mouse_set_mode() : VMDApp
MouseButton : Mouse
mouseMode : CmdMouseMode
mousemode_cb() : TextInterp, TclTextInterp
MouseModeEvent() : MouseModeEvent
MousePositionEvent() : MousePositionEvent
mouseSetting : CmdMouseMode
mouseX : DisplayDevice
mouseY : DisplayDevice
move() : VMDTkMenu, VMDTkinterMenu, VMDMenu, VMDFltkMenu
move_light() : Scene
move_mode() : Spaceball, Mouse
MOVEATOM : PickModeList, Mouse
MOVEFRAG : PickModeList, Mouse
movefrom() : Wavefunction
MoveMode : Win32Joystick, Spaceball, Mouse
moveMode : vmdwinjoystick
MOVEMOL : PickModeList, Mouse
MOVEREP : PickModeList, Mouse
MOVERES : PickModeList, Mouse
moveto() : VMDTracker
mpblx : ComputeOccupancyMap_t
mpbly : ComputeOccupancyMap_t
mpblz : ComputeOccupancyMap_t
msgtp : gofrparms_t
msmpot : MsmpotCuda_t
MSMS : AtomRep
MSMS_DIED : MSMSInterface
MSMSInterface() : MSMSInterface
MSOFTGDI : OpenGLExtensions
mtx : wkf_shared_iterator_struct, wkf_tasktile_stack_struct
mult() : Quat
mult_scale() : Displayable
multitextureunits : OpenGLExtensions
multmatrix() : VrmlDisplayDevice, Vrml2DisplayDevice, OpenGLRenderer, Matrix4, FileRenderer, DisplayDevice
multnorm3d() : Matrix4
multplaneeq3d() : Matrix4
multpoint3() : Quat
multpoint3d() : Matrix4
multpoint4d() : Matrix4
mx : ComputeOccupancyMap_t, Msmpot_t, occthrparms_t
my : ComputeOccupancyMap_t, Msmpot_t, occthrparms_t
my_color : GeometryMol
my_depth_sort : DisplayDevice
my_filename : FileRenderer
My_Fl_Positioner() : My_Fl_Positioner
myBrowser() : myBrowser
myFl_Chart() : myFl_Chart
myglwindow() : myglwindow
mytag : PickModeForce
mz : ComputeOccupancyMap_t, Msmpot_t, occthrparms_t

- n -

n : Surf, flint_t, Combinations, IsoSurface, TRIANGLE, CmdLabelTextFormat, CmdLabelTextOffset
n_clients : wkf_run_barrier_struct
n_waiting : wkf_run_barrier_struct
name : NameList< T >, MolFilePlugin, GeometryMol, FileRenderList, VolumetricData, ColorScale, CmdToolDeleteDevice, CmdToolAddDevice, PointGroupDefinition, DrawMolItem, DisplayDevice, cudadevprops, CoorData, CmdMolLoad, CmdMenuExtensionRemove, CmdMenuExtensionAdd, CmdColorItem, AtomRepParamStruct
NAME : AtomColor
nameindex : MolAtom
NameList() : NameList< T >
names : NameList< T >
nAtoms : BaseMolecule, AtomColor
natoms : MolFilePlugin, Msmpot_t, enthrparms
nbins : MsmpotCuda_t
nbpad : MsmpotCuda_t
nbrlist : MsmpotCuda_t, bondsearchthrparms
nbrlistlen : MsmpotCuda_t
nbrlistmax : MsmpotCuda_t
nbufsz : MsmpotLattice_t
nbx : ComputeOccupancyMap_t, occthrparms_t
nby : ComputeOccupancyMap_t, occthrparms_t
nbz : ComputeOccupancyMap_t, occthrparms_t
ncells : Msmpot_t
ncmds : VMDDisplayList::VMDLinkIter
ndevs : MsmpotCuda_t
near_clip() : DisplayDevice
nearClip : DisplayDevice
nearest_index() : Scene, FileRenderer
need2flip : IMDSim
need_find_bonds : BaseMolecule
need_matrix_recalc() : Displayable
need_secondary_structure() : DrawMolecule
needRedraw() : DisplayDevice
needUpdate() : Displayable
new_coords_ready : IMDSim
newB : CmdColorChange
NEWCARTOON : AtomRep
newDir : CmdAnimDir
newFrame : CmdAnimJump
newG : CmdColorChange
newname : CmdMolRename
newR : CmdColorChange
NEWRIBBONS : AtomRep
newSkip : CmdAnimSkip
newSpeed : CmdAnimSpeed
newStyle : CmdAnimStyle
next : VMDDisplayList, MolFilePlugin, CoorPluginData, CoorData, GridSearchPairlist, GridSearchPair, inthash_node_t, hash_node_t
next_atom_index : Msmpot_t
next_frame() : Molecule
next_molid() : VMDApp
next_ts_available() : IMDSim
nfragCyclic : BaseMolecule
nfragList : BaseMolecule
nFragments : BaseMolecule
ni : MsmpotLattice_t
nimages : CmdMolNumPeriodic
nj : MsmpotLattice_t
nlevels : Msmpot_t
nm : CmdLabelTextFormat, CmdLabelTextOffset
nNucleicFragments : BaseMolecule
NO_AXES : Axes
NO_CONNECTION : MSMSInterface
NO_EVAL : AtomSel
NO_INITIALIZATION : MSMSInterface
NO_PARSE : AtomSel
NO_PORTS : MSMSInterface
NO_REGEN : DrawMolItem
NO_STAGE : Stage
NODATA : BaseMolecule
node : YYSTYPE
node_type : atomparser_node
NONE : MoleculeGraphics
norm1 : DispCmdTriangle
norm2 : DispCmdTriangle
norm3 : DispCmdTriangle
norm_fac : shell_t
normal : OpenGLRenderer, FreeVRDisplayDevice, DisplayDevice, CaveDisplayDevice, VMDClipPlane, DispCmdVolSlice
NORMAL : Spaceball
normal_atom_coord() : GeometryMol
NORMAL_CURSOR : DisplayDevice
normalize() : IsoSurface
normalize_basis() : QMData
normalize_wavefunction() : Orbital
norml : DispCmdSquare
norms : MSMSInterface
NOSTEREO : DisplayDevice
notbol : match_data
NOTDONE : CoorData
noteol : match_data
NOTHING : SymbolTableElement
notify() : MaterialList, GeometryMonitor, DrawMolecule, DrawMoleculeMonitor
npbc : VMDDisplayList
npoints : DepthSortObject
nproc : QMData
nProteinFragments : BaseMolecule
nResidues : BaseMolecule
nSegments : BaseMolecule
nthreads : FindWithinData
nu : InterpParams_t
num : Stack< T >, SortableArray< T >, LinkagePath, SmallRing, ResizeArray< T >, NameList< T >, MoleculeList, MaterialList, Fragment, FileRenderList, IdList, Animation, Timestep, symbol_data, CmdToolDeleteDevice, CmdToolAddDevice, CmdToolOffset, CmdToolScaleSpring, CmdToolScaleForce, CmdToolScale, CmdToolDelete, CmdToolChange, Combinations
Num : NameList< T >
num_angles() : BaseMolecule
num_atoms : AtomSel
num_basis : QMData, orbthrparms
num_bin_offsets : ComputeOccupancyMap_t
num_binoffsets : occthrparms_t
num_cache_modes() : DisplayDevice
num_cart_func : shell_t
num_categories() : Scene
num_category_items() : Scene
num_children : Displayable
num_clipplanes() : VMDApp
num_color_categories() : VMDApp
num_color_category_items() : VMDApp
num_colors() : VMDApp, Scene
num_colorscale_methods() : VMDApp, Scene
num_conformers : ComputeOccupancyMap_t, occthrparms_t
num_coords : ComputeOccupancyMap_t
num_cterms() : BaseMolecule
num_cue_modes() : DisplayDevice
NUM_CUE_MODES : DisplayDevice
num_custom_singleword() : SymbolTable
num_devices() : CUDAAccel
num_dihedrals() : BaseMolecule
num_display_processes : DisplayDevice
num_electrons : QMData
num_elements() : MoleculeGraphics
num_extra_atoms : MsmpotCuda_t
num_extras : ComputeOccupancyMap_t, occthrparms_t
num_files() : Molecule
num_images() : PBCControls
num_impropers() : BaseMolecule
num_in_library : PluginMgr
num_lists() : GeometryList
num_menus() : VMDApp
num_molecules() : VMDApp
num_molreps() : VMDApp
num_prim_per_shell : orbthrparms
num_probes : ComputeOccupancyMap_t, occthrparms_t
num_projections() : DisplayDevice
NUM_PROJECTIONS : DisplayDevice
num_regular_colors() : VMDApp, Scene
num_render_modes() : DisplayDevice
num_shells : orbthrparms
num_shells_per_atom : orbthrparms
num_stereo_modes() : DisplayDevice
num_tool_types() : UIVR
num_tools() : UIVR
num_vdwparms : occthrparms_t
num_volume_data() : BaseMolecule
num_wave_f : QMData, orbthrparms
num_wavef_signa : QMData
numatoms : orbthrparms
numaxes() : Symmetry
numbonds : bondlist
numcol : enthrparms
numcoords : IMDSim
numdata : AtomRepParamStruct
numfacets : DispCmdTriMesh
numformats() : FileRenderList, FileRenderer
numframes() : DrawMolecule
numinbox : bondsearchthrparms
numItems : GeometryMol
numlines : DispCmdWireMesh
nummultisamples : OpenGLExtensions
numpicks : DispCmdPickPointIndexArray
numplane : enthrparms
numplanes() : Symmetry
numpoints : DispCmdLitPointArray, DispCmdPointArray
numprimaryaxes() : Symmetry
numprims : shell_t
numpt : enthrparms
numrotreflect() : Symmetry
numS2n() : Symmetry
numshells : basis_atom_t
numspheres : DispCmdSphereArray
numstrips : DispCmdTriStrips
numstripverts : DispCmdTriStrips
numtriangles : Surf, IsoSurface, IsoContour
numverts : DispCmdWireMesh, DispCmdTriStrips, DispCmdTriMesh
numvoxels : orbthrparms
NVIDIA : OpenGLExtensions
nvolsets : FileSpec
nWaters : BaseMolecule
nxbins : MsmpotCuda_t
nxcells : Msmpot_t
nybins : MsmpotCuda_t
nycells : Msmpot_t
nzbins : MsmpotCuda_t
nzcells : Msmpot_t

- o -

obj_index() : GeometryMol
objIndex : GeometryMol
objQuadric : OpenGLRenderer
OCCUP : AtomColor
occupancy() : BaseMolecule
OCCUPANCY : BaseMolecule
Off() : UIObject
off() : Displayable
OFF : Win32Joystick
offset : CmdToolOffset
offset_end : match_data
offset_max : match_data
offset_overflow : match_data
offset_vector : match_data
ogl_acrobat3dcapture : OpenGLRenderer
ogl_backgradient : OpenGLRenderer
ogl_cachedebug : OpenGLRenderer
ogl_cacheenabled : OpenGLRenderer
ogl_cachelistbase : OpenGLRenderer
ogl_clipmode : OpenGLRenderer
ogl_fogmode : OpenGLRenderer
ogl_glslmaterialindex : OpenGLRenderer
ogl_glslprojectionmode : OpenGLRenderer
ogl_glslserial : OpenGLRenderer
ogl_glsltexturemode : OpenGLRenderer
ogl_glsltoggle : OpenGLRenderer
ogl_lightcolor : OpenGLRenderer
ogl_lightingenabled : OpenGLRenderer
ogl_lightpos : OpenGLRenderer
ogl_lightstate : OpenGLRenderer
ogl_mvmatrix : OpenGLRenderer
ogl_pmatrix : OpenGLRenderer
ogl_rendstateserial : OpenGLRenderer
ogl_textMat : OpenGLRenderer
ogl_transpass : OpenGLRenderer
ogl_useblendedtrans : OpenGLRenderer
ogl_useglslshader : OpenGLRenderer
ogl_viewport : OpenGLRenderer
oglambient : OpenGLRenderer
ogldiffuse : OpenGLRenderer
oglmajor : OpenGLExtensions
oglmaterialindex : OpenGLRenderer
oglminor : OpenGLExtensions
oglopacity : OpenGLRenderer
ogloutline : OpenGLRenderer
ogloutlinewidth : OpenGLRenderer
oglrelease : OpenGLExtensions
oglrenderer : OpenGLExtensions
oglshininess : OpenGLRenderer
oglspecular : OpenGLRenderer
ok() : GeometryMol
okbutton : FrameSelector
olist : gofrparms_t
omega : InterpParams_t
on : Displayable, CmdToolCallback, FileRenderer::LightState, AtomSel
On() : UIObject
onoff : CmdMolShowRep
onoroff : CmdMolRepColorUpdate, CmdMolRepSelUpdate
opacity : VMDDisplayList, Material
open_file() : SnapshotDisplayDevice, LibTachyonDisplayDevice, FileRenderer
open_window() : OpenGLDisplayDevice
OpenGLCache() : OpenGLCache
OpenGLDisplayDevice() : OpenGLDisplayDevice
OpenGLExtensions() : OpenGLExtensions
OpenGLRenderer() : OpenGLRenderer
OpenGLShader() : OpenGLShader
operator *() : Vector3D
operator const char *() : JString
operator delete() : VMDDisplayList, FreeVRScene, Displayable, CaveScene
operator new() : VMDDisplayList, FreeVRScene, Displayable, CaveScene
operator!=() : JString
operator+ : Vector3D, JString
operator+=() : JString
operator-() : Vector3D
operator<() : JString, DepthSortObject
operator<<() : SmallRingLinkages, LinkageEdge, LinkagePath, SmallRing, Inform
operator<=() : JString
operator=() : Wavefunction, Matrix4, JString, DisplayDevice, AtomRep, AtomColor
operator==() : ColorScale, MSMSFace, MSMSCoord, JString, GraphicsFltkRepVolumetric::minmax
operator>() : JString, DepthSortObject
operator>=() : JString
operator[]() : SortableArray< T >, LinkagePath, SmallRing, ResizeArray< T >, Fragment, IdList
option : CmdRenderOption
options : real_pcre_extra, real_pcre
orbh : orbthrparms
orbids : wavef_signa_t
Orbital() : Orbital
orbitalgrid : orbthrparms
orbocc : wavef_signa_t
order : bond, axis
order_edge_atoms() : SmallRingLinkages
orient : VRPNTrackerUserData, VMDTracker
orientated : SmallRing
orientation() : VMDTracker, Tool, RotateTool
origin : VolumetricData, orbthrparms, MolData, RibbonFrame, orbthrparms
ortho() : Matrix4
ortho2() : Matrix4
ORTHOGRAPHIC : DisplayDevice
orthogtol : Symmetry
otheratoms : FindWithinData
outfile : FileRenderer
outline : VMDDisplayList, Material
outlinewidth : VMDDisplayList, Material
overlap : axis, plane, cudadevprops
override_current_frame() : DrawMolecule

- p -

p : GRIDCELL, TRIANGLE, SQUARECELL, LINE, hersheyhandle
padding1 : wkf_threadlaunch_struct, wkf_threadpool_workerdata_struct, wkf_run_barrier_struct
padding2 : wkf_threadlaunch_struct, wkf_threadpool_workerdata_struct, wkf_run_barrier_struct
padEpotmap : MsmpotCuda_t
padx : ComputeOccupancyMap_t
pady : ComputeOccupancyMap_t
padz : ComputeOccupancyMap_t
pairdist : bondsearchthrparms
pairlist : GridSearchPairlist
pairlistmutex : bondsearchthrparms
panels() : Stage
parent : Displayable
parms : wkf_threadpool_workerdata_struct, wkf_run_barrier_struct
parse() : SymbolTable
PARSE_SUCCESS : AtomSel
ParseTree() : ParseTree
path : VMDTkMenu, LinkagePath
paths : SmallRingLinkages, LinkageEdge
pause() : IMDSimThread, IMDSimBlocking, IMDSim, IMDMgr
PAUSE_OFF : CmdIMDSim
PAUSE_ON : CmdIMDSim
PAUSE_TOGGLE : CmdIMDSim
pbc : VMDDisplayList, CmdMolShowPeriodic
PBCControls() : PBCControls
pdhlatusec : busbwthrparms
pdhmbsec : busbwthrparms
period : spaceballevent
periodic : MolData
PERSPECTIVE : DisplayDevice
pfragCyclic : BaseMolecule
pfragList : BaseMolecule
pgm : vmd_opencl_orbital_handle
phase : wkf_run_barrier_struct
phdlatusec : busbwthrparms
phdmbsec : busbwthrparms
phi_x : Msmpot_t
phi_y : Msmpot_t
phi_z : Msmpot_t
physical_time : Timestep
PHYSICALTIME : AtomColor
PICK : PickModeList, Mouse
pick() : DisplayDevice
pick_atom_callback_cb() : TextInterp, TclTextInterp
pick_atom_cb() : TextInterp, TclTextInterp, PythonTextInterp
pick_callback_clear() : PickList
pick_check() : PickList
pick_cmd_list() : Pickable, Displayable
PICK_CURSOR : DisplayDevice
pick_end() : PickList, Pickable, DrawMolItem
PICK_EVENT : Command
pick_graphics() : PickModeMolLabel, PickMode
pick_graphics_cb() : TextInterp, TclTextInterp
pick_molecule_end() : PickModeUser, PickModeMove, PickModeMolLabel, PickModeCenter, PickModeAddBond, PickMode
pick_molecule_move() : PickModeMove, PickModeMolLabel, PickModeForceFragment, PickModeForceResidue, PickModeForceAtom, PickModeCenter, PickMode
pick_molecule_start() : PickModeUser, PickModeMove, PickModeMolLabel, PickModeForceFragment, PickModeForceResidue, PickModeForceAtom, PickModeCenter, PickModeAddBond, PickMode
pick_move() : PickList, Pickable, DrawMolItem, Axes
pick_point() : FileRenderer
pick_selection_cb() : TextInterp, TclTextInterp
pick_start() : PickList, Pickable, MoleculeGraphics, DrawMolItem
pick_value_cb() : TextInterp, TclTextInterp, PythonTextInterp
pickable : PickEvent
Pickable() : Pickable
pickable_on() : Pickable, DrawMolItem, Displayable
PickAtomCallbackEvent() : PickAtomCallbackEvent
PickAtomEvent() : PickAtomEvent
PickEvent() : PickEvent
PickGraphicsEvent() : PickGraphicsEvent
pickList : VMDApp
PickList() : PickList
PickMode() : PickMode
PickModeAddBond() : PickModeAddBond
PickModeAngles() : PickModeAngles
PickModeAtoms() : PickModeAtoms
PickModeBonds() : PickModeBonds
PickModeCenter() : PickModeCenter
PickModeDihedrals() : PickModeDihedrals
PickModeForce() : PickModeForce
PickModeForceAtom() : PickModeForceAtom
PickModeForceFragment() : PickModeForceFragment
PickModeForceResidue() : PickModeForceResidue
PickModeList() : PickModeList
pickModeList : VMDApp
PickModeMolLabel() : PickModeMolLabel
PickModeMove() : PickModeMove
PickModeMoveAtom() : PickModeMoveAtom
PickModeMoveFragment() : PickModeMoveFragment
PickModeMoveMolecule() : PickModeMoveMolecule
PickModeMoveRep() : PickModeMoveRep
PickModeMoveResidue() : PickModeMoveResidue
PickModeUser() : PickModeUser
PICKPOINT : MoleculeGraphics
PickSelectionEvent() : PickSelectionEvent
PickValueEvent() : PickValueEvent
PinchTool() : PinchTool
PlainTextInterp() : PlainTextInterp
planar : Best
plane() : Symmetry
planes : Best
plugin : CoorPluginData
plugin_dlopen() : VMDApp
plugin_update() : VMDApp
PLUGIN_UPDATE : Command
pluginlist : PluginMgr
PluginMgr() : PluginMgr
plugins() : PluginMgr
pmx : MsmpotCuda_t
pmy : MsmpotCuda_t
pmz : MsmpotCuda_t
POINT : MoleculeGraphics
point() : WavefrontDisplayDevice, TachyonDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
pointgroup : Best
pointgrouporder : Best
points : DepthSortObject
POINTS : AtomRep
pointSize : FileRenderer
pointSphereLists : OpenGLRenderer
pointsQuadric : OpenGLRenderer
Polygonise() : IsoSurface, IsoContour
pop() : VrmlDisplayDevice, Stack< T >, ResizeArray< T >
port : CmdIMDConnect
pos : Timestep, VRPNTrackerUserData, VMDTracker, FileRenderer::LightState, DispCmdPickPointIndex, DispCmdSphereIndex, DispCmdPoint, bondsearchthrparms
POS : AtomColor
pos1 : DispCmdCone, DispCmdSquare, DispCmdTriangle, DispCmdLine
pos2 : DispCmdCone, DispCmdSquare, DispCmdTriangle, DispCmdLine
pos3 : DispCmdSquare, DispCmdTriangle
pos4 : DispCmdSquare
pos_r : DispCmdSphere
position() : VMDTracker, Tool, RotateTool, JoystickTool
postag : DispCmdPickPoint
POSX : AtomColor
POSY : AtomColor
POSZ : AtomColor
POV3DisplayDevice() : POV3DisplayDevice
prepare() : VMDTitle, Stage, Scene, MoleculeGraphics, Molecule, GeometrySpring, GeometryList, FreeVRScene, FPS, DrawMolItem, DrawMolecule, DrawForce, DisplayRocker, Displayable, CaveScene, Axes
prepare3D() : OpenGLRenderer, FileRenderer, DisplayDevice
prepareOpaque() : OpenGLRenderer, DisplayDevice
prepareTrans() : OpenGLRenderer, DisplayDevice
prettyname() : MolFilePlugin
prim : shell_t
print() : Combinations, AtomGrid
print_cuda_devices() : CUDAAccel
print_wavefunction() : Orbital
PrintExtensions() : OpenGLExtensions
PrintInfoLog() : OpenGLShader
printMatrix() : Quat
printQuat() : Quat
PrintTool() : PrintTool
probe_vdw_params : ComputeOccupancyMap_t
probevdwparms : occthrparms_t
ProgramObject : OpenGLShader
Projection : DisplayDevice
projection() : DisplayDevice
projection_name() : DisplayDevice
PSDisplayDevice() : PSDisplayDevice
ptr : VMDDisplayList::VMDLinkIter
publicName : FileRenderer
push() : VrmlDisplayDevice, Stack< T >
putdata() : DispCmdPickPointIndexArray, DispCmdPickPointIndex, DispCmdPickPoint, DispCmdLineWidth, DispCmdLineType, DispCmdSphereType, DispCmdSphereRes, DispCmdVolumeTexture, DispCmdVolSlice, DispCmdTextOffset, DispCmdTextSize, DispCmdComment, DispCmdText, DispCmdColorIndex, DispCmdCone, DispCmdCylinder, DispCmdWireMesh, DispCmdTriStrips, DispCmdTriMesh, DispCmdSquare, DispCmdTriangle, DispCmdPolyLineArray, DispCmdLineArray, DispCmdLine, DispCmdLitPointArray, DispCmdPointArray, DispCmdSphereArray, DispCmdSphereIndex, DispCmdSphere, DispCmdPoint, DispCmdDataBlock
px2 : Msmpot_t
px3 : Msmpot_t
py2 : Msmpot_t
py3 : Msmpot_t
python_cb() : TextInterp, PythonTextInterp
PythonEvalEvent() : PythonEvalEvent
PythonTextInterp() : PythonTextInterp
pz2 : Msmpot_t
pz3 : Msmpot_t

- q -

qh : Msmpot_t
QMData() : QMData
QMTimestep : QMTimestep, Wavefunction
qsort() : SortableArray< T >
Quat() : Quat
QUERY : PickModeList, Mouse
queue_events() : OpenGLDisplayDevice, DisplayDevice

- r -

r2 : FindWithinData
R3dDisplayDevice() : R3dDisplayDevice
rad : DispCmdSphereIndex
RadianceDisplayDevice() : RadianceDisplayDevice
radii : bondsearchthrparms
RADIUS : BaseMolecule
radius : BaseMolecule, MolData, GraphicsFltkRepVDW, GraphicsFltkRepBonds, DispCmdCone
radius2 : DispCmdCone
radius_scale : VolMapCreateDensity
RadiusCounter() : RadiusCounter
RayShadeDisplayDevice() : RayShadeDisplayDevice
read_event() : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice
read_from_file() : UIText
read_init() : UIText
read_metadata() : MolFilePlugin
read_optional_structure() : MolFilePlugin
read_rawgraphics() : MolFilePlugin
read_structure() : MolFilePlugin
read_volumetric() : MolFilePlugin
readData() : MolData
reader() : IMDSimThread
readFile() : MolData
readpixels() : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice
ReadShaderSource() : OpenGLShader
recalc_bonds() : DrawMolecule
recalc_mat() : Displayable
recalc_ss() : DrawMolecule
recentFrame : CoorPluginData
record_database() : Molecule
record_file() : Molecule
record_remarks() : Molecule
recurse() : Combinations
RegenChoices : DrawMolItem
register_cb() : PluginMgr
register_monitor() : DrawMolecule
register_proc() : VMDTkMenu
register_UI() : CommandQueue
register_windowproc() : VMDTkinterMenu
rel_screen_pos() : FltkOpenGLDisplayDevice, DisplayDevice
remove() : SortableArray< T >, ResizeArray< T >
remove_child() : Displayable
remove_custom_singleword() : SymbolTable
remove_device() : Tool
remove_last() : LinkagePath, SmallRing
remove_menu() : VMDApp
remove_pickable() : PickList
remove_tool() : UIVR
rename() : Molecule
rendenum : OpenGLExtensions
render() : SnapshotDisplayDevice, PSDisplayDevice, OpenGLRenderer, FreeVRDisplayDevice, FileRenderList, FileRenderer, DisplayDevice, CaveDisplayDevice
RENDER : Command
render_done() : PSDisplayDevice, OpenGLRenderer, DisplayDevice
render_mode() : DisplayDevice
render_name() : DisplayDevice
RENDER_OPTION : Command
renderer_process : DisplayDevice
RenderFltkMenu() : RenderFltkMenu
RenderManDisplayDevice() : RenderManDisplayDevice
renderMode : DisplayDevice
renderModes : DisplayDevice
renderNames : DisplayDevice
REP : CmdMolChangeRepItem
REP_REGEN : DrawMolItem
RepChoice() : RepChoice
RepChoiceSmall() : RepChoiceSmall
repcmd() : GraphicsFltkRepVolumeSlice, GraphicsFltkRepIsosurface, GraphicsFltkRepSurf, GraphicsFltkRepHBonds, GraphicsFltkRepMSMS, GraphicsFltkRepSolvent, GraphicsFltkRepNewCartoon, GraphicsFltkRepCartoon, GraphicsFltkRepNewRibbons, GraphicsFltkRepRibbons, GraphicsFltkRepTube, GraphicsFltkRepLicorice, GraphicsFltkRepTrace, GraphicsFltkRepDotted, GraphicsFltkRepBeads, GraphicsFltkRepVDW, GraphicsFltkRepPoints, GraphicsFltkRepCPK, GraphicsFltkRepDynamicBonds, GraphicsFltkRepBonds, GraphicsFltkRepLines, GraphicsFltkRep
repcontrols : GraphicsFltkMenu
repData : CmdMolChangeRepItem
repdata : AtomRepParamStruct
RepData : CmdMolChangeRepItem
RepDataNames : AtomRep
repindex : GraphicsFltkMenu
replace_id() : MoleculeGraphics
RepMethod : AtomRep
repn : CmdMolShowRep, CmdMolSmoothRep, CmdMolDrawFrames, CmdMolScaleMinmax, CmdMolNumPeriodic, CmdMolShowPeriodic, CmdMolDeleteRep, CmdMolRepColorUpdate, CmdMolRepSelUpdate, CmdMolChangeRepItem, CmdMolChangeRep
repnum : CmdToolRep
repNumber : DrawMolItem
reposition_window() : DisplayDevice
representation() : MoleculeList
representation_index() : DrawMolItem
require_cave_name() : SensorConfig
require_freevr_name() : SensorConfig
require_local() : SensorConfig
require_volume_texture() : OpenGLRenderer
res : DispCmdSphereRes, DispCmdCone
rescale_colorscale_minmax() : AtomColor
reset : Win32Joystick, UIObject, Spaceball, OpenGLShader, Mouse, Inform, GraphicsFltkRep, CmdMolScaleMinmax
reset_and_free() : VMDDisplayList
reset_device_menus() : ToolFltkMenu
reset_disp_list() : Displayable
reset_lights() : Scene
reset_rep() : GraphicsFltkMenu
reset_tool_list() : ToolFltkMenu
reset_transformation() : Displayable
ResetViewPending : VMDApp
reshape() : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice
resid : Residue, MolAtom
RESID : AtomColor
residue() : BaseMolecule
Residue() : Residue
residueList : BaseMolecule
residues : Fragment
residueType : Residue, MolAtom
resize_window() : DisplayDevice
ResizeArray() : ResizeArray< T >
RESNAME : AtomColor
resnameindex : MolAtom
resNames : BaseMolecule
resolution : GraphicsFltkRepVDW, GraphicsFltkRepBonds
ResolutionCounter() : ResolutionCounter
restore_default() : MaterialList
RESTYPE : AtomColor
resTypes : MoleculeList
returns_a : SymbolTableElement
reverse() : SmallRing
RIBBONS : AtomRep
right : OpenGLRenderer, DisplayDevice, RibbonFrame, atomparser_node
right_atom : LinkageEdge
right_eye_dir() : DisplayDevice
RIGHTEYE : DisplayDevice
rm : hersheyhandle
rmap_x : Msmpot_t
rmap_y : Msmpot_t
rmap_z : Msmpot_t
rmsd : Best
ROCKOFF : Command
ROCKON : Command
root : Scene, MaterialList
rootWindowID : glxdata
rot : Matrix4, FileRenderer, DispCmdCylinder
rot_off() : Displayable
rot_on() : Displayable
rot_orient : VMDTracker
ROTATE : Command
rotate() : Quat, PickModeMoveRep, PickModeMoveMolecule, PickModeMoveFragment, PickModeMoveResidue, PickModeMoveAtom, PickModeMove
rotate_axis() : Matrix4
rotate_light() : Scene
RotateTool() : RotateTool
rotating() : Displayable
ROTATION : Win32Joystick, Mouse
rotm : Displayable
ROTMAT : Command
rotMat : CmdRotMat
rotreflect() : Symmetry
rotreflections : Best
rslt : wkf_run_barrier_struct
rsltparms : wkf_run_barrier_struct
runbar : wkf_threadpool_struct
runcommand() : UIObject, CommandQueue
runtitle : QMData
runtype : QMData
rx : spaceballevent
ry : spaceballevent
rz : spaceballevent

- s -

S : elementsummary
s : wkf_tasktile_stack_struct, intstack, CmdScale, atomparser_string
save_state() : VMDApp, UIText
saved_exec_string() : FileRenderer
SaveTrajectoryFltkMenu() : SaveTrajectoryFltkMenu
sball : glxdata
sballevent : glxdata
scale : Matrix4, FileRenderer, CmdToolScaleSpring, CmdToolScaleForce, CmdToolScale, Displayable
SCALE : Command
SCALE_CURSOR : DisplayDevice
scale_factor() : MoleculeGraphics, DrawMolecule
scale_off() : Displayable
scale_on() : Displayable
scale_radius() : FileRenderer
scalemax : CmdMolScaleMinmax
scalemin : CmdMolScaleMinmax
scaling() : Displayable
SCALING : Win32Joystick, Spaceball, Mouse
Scene() : Scene
scene : VMDApp, Displayable
scene_resetview() : VMDApp
scene_resetview_newmoldata() : VMDApp
scene_rock() : VMDApp
scene_rockoff() : VMDApp
scene_rotate_by() : VMDApp
scene_rotate_to() : VMDApp
scene_scale_by() : VMDApp
scene_scale_to() : VMDApp
scene_stoprotation() : VMDApp
scene_translate_by() : VMDApp
scene_translate_to() : VMDApp
scftype : QMData
score_axis() : Symmetry
score_inversion() : Symmetry
score_plane() : Symmetry
score_rotary_reflection() : Symmetry
scramble_array() : AtomGrid
screen_height() : DisplayDevice
screenX : DisplayDevice
screenY : DisplayDevice
search() : JRegex
SEGNAME : AtomColor
segnameindex : MolAtom
segNames : BaseMolecule
sel : VolMapCreate, CmdMolColor, CmdMolRep, CmdMolSelect
SEL : CmdMolChangeRepItem
SEL_REGEN : DrawMolItem
selbuilder : GraphicsFltkMenu
sele : atomparser_node
select_atoms() : SaveTrajectoryFltkMenu
select_tool() : ToolFltkMenu
select_tool_type() : ToolFltkMenu
selected : AtomSel
selected_molid : SaveTrajectoryFltkMenu
selection : MoleculeList, FileSpec, CoorPluginData
SelectionBuilder() : SelectionBuilder
selectiontext() : GraphicsFltkMenu
selectmol() : VMDMenu, SaveTrajectoryFltkMenu, GraphicsFltkMenu, FileChooserFltkMenu
self : isosurface_cbdata
send() : Inform
send_forces() : IMDSimThread, IMDSimBlocking, IMDSim, IMDMgr
sendforce() : VRPNFeedback, Tool, Feedback
SensorConfig() : SensorConfig
serial : VMDDisplayList
set() : AtomGrid, AtomGridCell
set_aasamples() : FileRenderer
set_alignsel() : VolMapCreateILS
set_ambient() : MaterialList
set_angletype() : BaseMolecule
set_angular_momenta() : QMData
set_angular_momentum() : QMData
set_angular_momentum_str() : QMData
set_ao_ambient() : DisplayDevice
set_ao_direct() : DisplayDevice
set_ao_mode() : DisplayDevice
set_aosamples() : FileRenderer
set_array() : DispCmdTriangle
set_aspectratio() : FileRenderer
set_autoupdate() : GraphicsFltkMenu
set_backgradient() : OpenGLRenderer, DisplayDevice
set_background() : OpenGLRenderer, FileRenderer, DisplayDevice
set_background_mode() : Scene, DisplayDevice
set_buttons() : UIVR
set_cache_mode() : OpenGLRenderer, DisplayDevice
set_callbacks() : UIObject
set_carthessian() : QMData
set_category_item() : Scene
set_cent_trans() : Displayable
set_charges() : QMTimestep
set_checkbonds() : Symmetry
set_checkpoint() : VolMapCreate
set_clip_center() : VMDDisplayList, Displayable
set_clip_color() : VMDDisplayList, Displayable
set_clip_normal() : VMDDisplayList, Displayable
set_clip_status() : VMDDisplayList, Displayable
set_coeffs() : Wavefunction
set_color() : VrmlDisplayDevice, Vrml2DisplayDevice, RadianceDisplayDevice, MoleculeList, GeometryMol, FileRenderer
set_color_value() : Scene
set_colorscale_colors() : VMDApp, Scene
set_colorscale_method() : Scene
set_colorscale_minmax() : AtomColor
set_colorscale_value() : Scene
set_colorupdate() : GraphicsFltkMenu
set_copyunitcell() : IMDMgr
set_cue_density() : DisplayDevice
set_cue_end() : DisplayDevice
set_cue_mode() : DisplayDevice
set_cue_start() : DisplayDevice
set_cursor() : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice
set_data() : NameList< T >, myFl_Chart
set_dataset_flag() : BaseMolecule
set_default_color() : MoleculeList
set_default_material() : MoleculeList
set_default_representation() : MoleculeList
set_default_selection() : MoleculeList
set_diffuse() : MaterialList
set_dihedraltype() : BaseMolecule
set_double_fctn : SymbolTableElement
set_drawframes() : DrawMolItem
set_eofexit() : VMDApp
set_exec_string() : FileRenderer
set_eye_defaults() : DisplayDevice
set_eye_dir() : DisplayDevice
set_eye_dist() : DisplayDevice
set_eye_pos() : DisplayDevice
set_eye_up() : DisplayDevice
set_eyesep() : DisplayDevice
set_far_clip() : DisplayDevice
set_fctn : SymbolTableElement
set_feedback() : UIVR
set_force() : PickModeForce
set_force_scale() : UIVR
set_forcescale() : ToolFltkMenu
set_format() : FileRenderList, FileRenderer
set_glob_trans() : Displayable
set_gradients() : QMTimestep
set_grid() : Orbital
set_grid_stepsize() : GraphicsFltkRepIsosurface
set_grid_to_bbox() : Orbital
set_imagesize() : FileRenderer
set_imagmodes() : QMData
set_impropertype() : BaseMolecule
set_int_fctn : SymbolTableElement
set_intensities() : QMData
set_inthessian() : QMData
set_keep_rate() : IMDMgr
set_keyword_double : SymbolTableElement
set_keyword_int : SymbolTableElement
set_keyword_single : SymbolTableElement
set_keyword_string : SymbolTableElement
set_left_rot() : VMDTracker
set_line_style() : OpenGLRenderer, FileRenderer
set_line_width() : POV3DisplayDevice, OpenGLRenderer, FileRenderer
set_material() : MoleculeList, FileRenderer
set_max_stride() : Spaceball
set_maxenergy() : VolMapCreateILS
set_maxforce() : Feedback
set_maxnumatoms() : Symmetry
set_minmax() : VolMapCreateILS, VolMapCreate
set_mouse_callbacks() : VMDApp
set_mouse_rocking() : VMDApp
set_name() : VolumetricData, NameList< T >, MaterialList
set_natoms() : MolFilePlugin
set_near_clip() : DisplayDevice
set_normalmodes() : QMData
set_null_region() : Spaceball
set_occupancies() : Wavefunction
set_offset() : ToolFltkMenu, VMDTracker
set_opacity() : MaterialList
set_orbenergies() : Wavefunction
set_orbids() : Wavefunction
set_orbitalenergies() : QMTimestep
set_outline() : MaterialList
set_outlinewidth() : MaterialList
set_overlaptol() : Symmetry
set_pbc() : VolMapCreateILS, GraphicsFltkMenu, DrawMolItem
set_pbc_images() : DrawMolItem
set_persp() : OpenGLRenderer
set_pick() : GeometrySpring, GeometryMol, GeometryDihedral, GeometryBond, GeometryAtom, GeometryAngle
set_pick_mode() : PickModeList
set_pick_selection() : GeometryMol
set_pick_value() : GeometryMol
set_position_scale() : UIVR
set_positionscale() : ToolFltkMenu
set_probe() : VolMapCreateILS
set_probe_symmetry() : VolMapCreateILS
set_projection() : DisplayDevice
set_render_mode() : OpenGLRenderer, DisplayDevice
set_render_option() : FileRenderList
set_representation() : MoleculeList
set_resolution() : Orbital
set_right_rot() : VMDTracker
set_rocking() : Mouse
set_rot() : Displayable
set_scale() : VMDTracker, Displayable
set_scfenergies() : QMTimestep
set_screen_pos() : DisplayDevice
set_selection() : SelectionBuilder, MoleculeList
set_sensitivity() : Spaceball
set_shadow_mode() : DisplayDevice
set_shininess() : MaterialList
set_single_fctn : SymbolTableElement
set_smoothing() : DrawMolItem
set_specular() : MaterialList
set_sphere_mode() : OpenGLRenderer
set_sphere_res() : OpenGLRenderer, FileRenderer
set_sphere_style() : FileRenderer
set_spring_scale() : UIVR
set_springscale() : ToolFltkMenu
set_stereo_mode() : OpenGLRenderer, FreeVRDisplayDevice, DisplayDevice, CaveDisplayDevice
set_string_fctn : SymbolTableElement
set_text() : VMDApp
set_text_format() : GeometryMol
set_text_offset() : GeometryMol
set_text_size() : GeometryMol
set_toolrep() : ToolFltkMenu
set_tracker() : UIVR
set_trans_rate() : IMDMgr
set_transform() : VolMapCreateILS
set_transrate() : IMDSimThread, IMDSimBlocking, IMDSim
set_values() : GraphicsFltkRepVolumeSlice, GraphicsFltkRepIsosurface, GraphicsFltkRepSurf, GraphicsFltkRepHBonds, GraphicsFltkRepMSMS, GraphicsFltkRepSolvent, GraphicsFltkRepNewCartoon, GraphicsFltkRepNewRibbons, GraphicsFltkRepRibbons, GraphicsFltkRepLicorice, GraphicsFltkRepVDW, GraphicsFltkRepPoints, GraphicsFltkRepCPK, GraphicsFltkRepDynamicBonds, GraphicsFltkRepBonds, GraphicsFltkRepLines, GraphicsFltkRep
set_wavef_idtag() : QMTimestep
set_wavefunction() : QMTimestep
set_wavenumbers() : QMData
setbondorder() : BaseMolecule
setbondtype() : BaseMolecule
setconstraint() : Tool
setforcefield() : Tool
setforcescale() : Tool
setGridData() : VolumeTexture
setids : FileSpec
setoffset() : Tool
setplaneconstraint() : Tool
setscale() : Tool
setspringscale() : SpringTool, TugTool, Tool, PinchTool
setString() : TextInterp, TclTextInterp
setTextFormat() : GeometryList
setTextOffset() : GeometryList
setTextSize() : GeometryList
setup_initial_opengl_state() : OpenGLRenderer
setvalue() : RepChoiceSmall, RepChoice
shadowEnabled : DisplayDevice
ShadowMode : DisplayDevice
shadows_enabled() : DisplayDevice
SHADOWS_OFF : DisplayDevice
SHADOWS_ON : DisplayDevice
Shapes : MoleculeGraphics
sharesLinkageEdges() : SmallRingLinkages
shearstereo : OpenGLRenderer
shell : basis_atom_t
shell_symmetry : orbthrparms
shell_types : orbthrparms
SHIFT : DisplayDevice
shift_state() : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice
shininess : VMDDisplayList, Material
ShortSlider() : ShortSlider
show() : MoleculeList
show_geometry() : GeometryList
show_rep() : DrawMolecule
show_repcontrols() : GraphicsFltkMenu
show_stride_message() : VMDApp
sigma : Symmetry, elementsummary
simplegraphics : OpenGLRenderer
simstate : IMDSim
single_fctn : SymbolTableElement
SINGLEWORD : SymbolTableElement
singleword : atomsel_ctxt
size : IndexList, wkf_tasktile_stack_struct, intstack, inthash_t, hash_t, DispCmdTextSize, DispCmdLitPointArray, DispCmdPointArray, CmdLabelTextSize
sizeHints : glxdata
skip() : MolFilePlugin, Animation
SmallRing() : SmallRing
SmallRingLinkages() : SmallRingLinkages
smcount : cudadevprops
SnapshotDisplayDevice() : SnapshotDisplayDevice
sock : IMDSim
solidSphereLists : OpenGLRenderer
SOLVENT : AtomRep
sort_items() : GeometryMol
sort_orbitals() : QMTimestep
sort_wave_coefficients() : Wavefunction
SortableArray() : SortableArray< T >
Spaceball() : Spaceball
spaceball() : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice
spaceball_cb() : TextInterp, TclTextInterp
spaceball_get_tracker_status() : VMDApp
SPACEBALL_MODE : Command
spaceball_set_mode() : VMDApp
spaceball_set_null_region() : VMDApp
spaceball_set_sensitivity() : VMDApp
SpaceballButtons() : SpaceballButtons
SpaceballEvent() : SpaceballEvent
spaceballMode : CmdSpaceballMode
SpaceballTracker() : SpaceballTracker
spec : CmdMolLoad
specular : VMDDisplayList, Material
speed() : Animation
SPHERE : MoleculeGraphics
sphere() : VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
SphereList : OpenGLRenderer
sphereMode : DisplayDevice
SPHERERAD : AtomRep
sphereRes : DisplayDevice
sphereres : DispCmdSphereArray
SPHERERES : AtomRep
sphereResolution : FileRenderer
sphereStyle : FileRenderer
sphericaltop : Best
spin : wavef_signa_t
spline_basis : DrawMolItem
split : Msmpot_t
springscale : Tool
SpringTool() : SpringTool
square() : TachyonDisplayDevice, RenderManDisplayDevice, RadianceDisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
sstruct : Residue
st : atomparser_string
Stack() : Stack< T >
stack_size() : Stack< T >
stage : VMDApp
Stage() : Stage
STAGE_BEHIND : Stage
STAGE_LEFT : Stage
STAGE_LOWER : Stage
STAGE_ORIGIN : Stage
STAGE_RIGHT : Stage
stage_set_location() : VMDApp
stage_set_numpanels() : VMDApp
STAGE_UPPER : Stage
StagePos : Stage
STAGEPOS_TOTAL : Stage
start : VMDTracker, Feedback, Buttons, wkf_shared_iterator_struct, wkf_tasktile_struct
start_bits : real_pcre_extra
start_clipgroup() : TachyonDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, FileRenderer
start_ring : LinkagePath
start_rocking() : DisplayRocker
start_subject : match_data
start_tug() : SpringTool, TugTool, PinchTool
startserver() : VMDCollab
stat : Buttons
state() : Buttons, PBCControls
status : QMData
steal_sensor() : Tool
stencil : InterpParams_t
StepCounter() : StepCounter
steps : CmdRockOn, CmdRotate
stereo_mode() : DisplayDevice
stereo_name() : DisplayDevice
stereodrawforced : OpenGLExtensions
stereoModes : DisplayDevice
stereoNames : DisplayDevice
STLDisplayDevice() : STLDisplayDevice
stop_rocking() : DisplayRocker
stop_rotation() : Mouse
STOPROT : Command
stopserver() : VMDCollab
store() : AtomGrid
storeData() : AtomList
storeFile() : AtomList
str : CmdMolChangeRepItem
stride : FileSpec
stridevalue : FrameSelector
string_fctn : SymbolTableElement
STRINGFCTN : SymbolTableElement
stringfctn_fctn : SymbolTableElement
STRUCTURE : AtomRep, AtomColor
subcube_total : MsmpotCuda_t
summary : PointGroupDefinition
super_load() : FileRenderer
super_materials() : FileRenderer
super_multmatrix() : FileRenderer
super_rot() : FileRenderer
super_scale() : FileRenderer
super_set_color() : FileRenderer
super_set_material() : FileRenderer
super_text_position() : FileRenderer
super_translate() : FileRenderer
supports_gui() : OpenGLRenderer, DisplayDevice
Surf() : Surf
SURF : AtomRep
surface_type : MSMSFace
sval : symbol_data
swap() : SortableArray< T >
swap4_aligned() : IMDSim
symbol_data() : symbol_data
SymbolTable() : SymbolTable
SymbolTableElement() : SymbolTableElement
symdesc : SymbolTableElement
symmetrictop : Best
Symmetry() : Symmetry
symtype : SymbolTableElement

- t -

t : DispCmdVolSlice
T : IMDEnergies
t_name : yytoktype
t_val : yytoktype
table : atomsel_ctxt
tables : real_pcre
TachyonDisplayDevice() : TachyonDisplayDevice
tag : PickEvent, DispCmdPickPointIndex, DispCmdPickPoint
target() : Tool
tcl_cb() : TextInterp, TclTextInterp
TclEvalEvent() : TclEvalEvent
TclTextInterp() : TclTextInterp
test_dataset_flag() : BaseMolecule
testloops : maddthrparms
texmap : DispCmdVolumeTexture
texmode : DispCmdVolSlice
TEXT : MoleculeGraphics
text : Inform, FileRenderer, DepthSortObject
text_format() : GeometryMol
text_offset() : GeometryMol
text_position() : FileRenderer
TextInterp() : TextInterp
textinterp_change() : VMDApp
textpos : FileRenderer
texturecache : OpenGLRenderer
thickness : GraphicsFltkRepRibbons
threadcount : wkf_threadlaunch_struct, wkf_threadpool_workerdata_struct, gofrparms_t, bondsearchthrparms
threadid : wkf_threadlaunch_struct, wkf_threadpool_workerdata_struct, gofrparms_t, bondsearchthrparms
threads : wkf_threadpool_struct
threshold : MolData
THROB : AtomColor
thrpool : wkf_threadpool_workerdata_struct
tid : FindWithinData
timer : wkfmsgtimer
Timestep() : Timestep
TIMESTEP : AtomColor
timestep() : AtomSel
timestep_cb() : TextInterp, TclTextInterp, PythonTextInterp
TimestepEvent() : TimestepEvent
timesteps : Timestep
tm : Displayable, CoorPluginData
TO : CmdScale, CmdTranslate, CmdRotate, CmdRotMat
to_camel() : JString
togglepause() : IMDMgr
Tool() : Tool
TOOL_ADD_DEVICE : Command
TOOL_CALLBACK : Command
TOOL_CHANGE : Command
tool_change_type() : VMDApp
TOOL_CREATE : Command
tool_create() : VMDApp
TOOL_DELETE : Command
tool_delete() : VMDApp
TOOL_DELETE_DEVICE : Command
tool_location_update() : Tool
tool_name() : UIVR
TOOL_OFFSET : Command
TOOL_REP : Command
TOOL_SCALE : Command
TOOL_SCALE_FORCE : Command
TOOL_SCALE_SPRING : Command
tool_set_force_scale() : VMDApp
tool_set_position_scale() : VMDApp
tool_set_spring_scale() : VMDApp
tool_type() : UIVR
ToolFltkMenu() : ToolFltkMenu
toolnum : CmdToolRep
top : Stack< T >, MoleculeList, wkf_tasktile_stack_struct, intstack
top_backref : real_pcre
top_bracket : real_pcre
TOTAL : Command, AtomRep, AtomColor
TOTAL_BUTTONS : DisplayDevice
total_shells() : Orbital
totalcharge : QMData
totalframes : CoorPluginData
totb : FindWithinData, bondsearchthrparms
TRACE : AtomRep
TRACKER : Spaceball
trajectory_cb() : TextInterp, TclTextInterp, PythonTextInterp
TrajectoryReadEvent() : TrajectoryReadEvent
TRANS_CURSOR : DisplayDevice
TRANSFER : CmdIMDRate
transformed_atom_coord() : GeometryMol
TRANSLATE : Command
translate() : PickModeMoveRep, PickModeMoveMolecule, PickModeMoveFragment, PickModeMoveResidue, PickModeMoveAtom, PickModeMove, Matrix4, FileRenderer
TRANSLATION : Win32Joystick, Mouse
transMat : FileRenderer, DisplayDevice
transpose() : Matrix4
transvec() : Matrix4
transvecinv() : Matrix4
transX : VMDDisplayList
transXinv : VMDDisplayList
transY : VMDDisplayList
transYinv : VMDDisplayList
transZ : VMDDisplayList
transZinv : VMDDisplayList
triangle() : WavefrontDisplayDevice, VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, STLDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
TRIANGLE : MoleculeGraphics
TRICOLOR : MoleculeGraphics
tricolor() : Vrml2DisplayDevice, TachyonDisplayDevice, RenderManDisplayDevice, R3dDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer
trimesh() : TachyonDisplayDevice, POV3DisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer
TRINORM : MoleculeGraphics
tristrip() : TachyonDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer
truncatelastn() : ResizeArray< T >
TS_LAST : AtomSel
TS_NOW : AtomSel
tstep : IMDEnergies
TUBE : AtomRep
tug() : Tool
TugTool() : TugTool
turnOn : CmdMenuShow
tx : spaceballevent
ty : spaceballevent
type : shell_t, wavef_signa_t, symbol_data, CmdToolChange, CmdToolCreate, axis, plane, IMDheader, DispCmdLineType, DispCmdSphereType, CmdMolLoad
TYPE : AtomColor
type_name() : SpringTool, TugTool, Tool, RotateTool, PrintTool, PinchTool, JoystickTool, GrabTool
typecode() : NameList< T >
typeindex : MolAtom
tz : wkf_timer, spaceballevent

- u -

UIObject() : UIObject
uiText : VMDApp
UIText() : UIText
uivr : VMDApp
UIVR() : UIVR
unfix() : MoleculeList, Displayable
unfreeze() : VMDMenu
ungrab() : Tool
uniq_resid : MolAtom
unique_name() : GeometryMol
uniquegmName : GeometryMol
unpause() : IMDSimThread, IMDSimBlocking, IMDSim, IMDMgr
unregister_monitor() : DrawMolecule
unregister_UI() : CommandQueue
unset_dataset_flag() : BaseMolecule
up : RibbonFrame
upcase() : JString
update() : SpaceballTracker, SpaceballButtons, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, FreeVRTracker, FreeVRButtons, Feedback, CaveTracker, CaveButtons, Buttons, OpenGLDisplayDevice, MolBrowser, IMDSimBlocking, IMDSim, PBCControls, GeometryMol, FreeVRDisplayDevice, FltkOpenGLDisplayDevice, FileRenderer, DisplayDevice, CaveDisplayDevice
update_avail_orbs() : QMData
update_exec_cmd() : TachyonDisplayDevice, FileRenderer
update_lists() : OpenGLRenderer
update_macrobrowser() : SelectionBuilder
update_material() : Displayable
update_molchooser() : GraphicsFltkMenu
update_pbc() : GraphicsFltkMenu
update_rep() : GraphicsFltkMenu
update_repbrowser() : GraphicsFltkMenu
update_repindex() : GraphicsFltkMenu
update_replist() : ToolFltkMenu
update_scaleimage() : ColorFltkMenu
update_selection() : SelectionBuilder, GraphicsFltkMenu
update_shader_uniforms() : OpenGLRenderer
update_toolrep_choosers() : ToolFltkMenu
UpdateDisplay : VMDApp
updatetime : wkfmsgtimer
upDir : DisplayDevice
use_color() : MoleculeGraphics
use_colors() : DisplayDevice
use_colorscale_auto() : GraphicsFltkMenu
use_colorscale_minmax() : GraphicsFltkMenu
use_context() : ParseTree
use_material() : MoleculeGraphics
use_materials() : MoleculeGraphics
use_molecule() : SelectionBuilder
used : Buttons
USER : Win32Joystick, Spaceball, AtomColor
user : Timestep
user2 : Timestep
USER2 : AtomColor
USER3 : AtomColor
user3 : Timestep
user4 : Timestep
USER4 : AtomColor
user_minmax : VolMapCreate
userkey_cb() : TextInterp, TclTextInterp, PythonTextInterp
userKeyDesc : VMDApp
UserKeyEvent() : UserKeyEvent
userKeys : VMDApp
USERPOINT : Mouse
uses_colorscale() : AtomColor
UseShader() : OpenGLShader
USL : CmdToolCreate

- v -

v : Surf, axis, plane, IsoSurface, IsoContour, DispCmdVolSlice
v0 : DispCmdVolumeTexture
v1 : DispCmdVolumeTexture
v2 : DispCmdVolumeTexture
v3 : DispCmdVolumeTexture
val : GRIDCELL, SQUARECELL
value() : GeometryMol
valuePos : GeometryMol
VDW : AtomRep
vdw_params : ComputeOccupancyMap_t
vdw_type : ComputeOccupancyMap_t
vdwparms : occthrparms_t
vdwtype : AtomPosType
vel : Timestep
VELOCITY : AtomColor
version_string : QMData
vertex : MSMSFace
vertexfusion() : IsoSurface
VertexInterp() : IsoSurface, IsoContour
VertexShaderObject : OpenGLShader
visible_name() : FileRenderer
vmd_choose_file() : VMDApp
VMDApp() : VMDApp
vmdapp : OpenGLDisplayDevice
VMDClipPlane() : VMDClipPlane
vmdcollab : VMDApp
VMDCollab() : VMDCollab
VMDDisplayList() : VMDDisplayList
VMDexit() : VMDApp
VMDFltkMenu() : VMDFltkMenu
vmdGetProcAddress() : OpenGLExtensions
VMDinit() : VMDApp
VMDMenu() : VMDMenu
vmdQueryExtension() : OpenGLExtensions
vmdQueryGLVersion() : OpenGLExtensions
VMDTempFile() : VMDTempFile
VMDTitle() : VMDTitle
VMDTkinterMenu() : VMDTkinterMenu
VMDTkMenu() : VMDTkMenu
VMDTracker() : VMDTracker
VMDupdate() : VMDApp
void() : OpenGLExtensions
void_fctn : SymbolTableElement
vol : IsoSurface, IsoContour
volindex_update() : GraphicsFltkMenu
volindex_visible() : GraphicsFltkMenu
volmap : VolMapCreate
VolMapCreate() : VolMapCreate
VolMapCreateCoulombPotential() : VolMapCreateCoulombPotential
VolMapCreateCoulombPotentialMSM() : VolMapCreateCoulombPotentialMSM
VolMapCreateDensity() : VolMapCreateDensity
VolMapCreateDistance() : VolMapCreateDistance
VolMapCreateILS() : VolMapCreateILS
VolMapCreateInterp() : VolMapCreateInterp
VolMapCreateMask() : VolMapCreateMask
VolMapCreateOccupancy() : VolMapCreateOccupancy
VOLSLICE : AtomRep
VOLUME : AtomColor
volume_index() : AtomColor
volume_texture_off() : TachyonDisplayDevice, LibTachyonDisplayDevice, FileRenderer
volume_texture_on() : TachyonDisplayDevice, LibTachyonDisplayDevice, FileRenderer
volumeList : BaseMolecule
VolumeTexture() : VolumeTexture
VolumetricData() : VolumetricData
voxel_coord_from_cartesian_coord() : VolumetricData
voxel_gradient_fast() : VolumetricData
voxel_gradient_from_coord() : VolumetricData
voxel_gradient_interpolate() : VolumetricData
voxel_gradient_interpolate_from_coord() : VolumetricData
voxel_gradient_safe() : VolumetricData
voxel_index_from_coord() : VolumetricData
voxel_value() : VolumetricData
voxel_value_from_coord() : VolumetricData
voxel_value_interpolate() : VolumetricData
voxel_value_interpolate_from_coord() : VolumetricData
voxel_value_safe() : VolumetricData
voxelsize : orbthrparms
Vrml2DisplayDevice() : Vrml2DisplayDevice
VrmlDisplayDevice() : VrmlDisplayDevice
VRPNButtons() : VRPNButtons
VRPNFeedback() : VRPNFeedback
VRPNTracker() : VRPNTracker
vSize : DisplayDevice
vx : vmdwinjoystick
vy : vmdwinjoystick
vz : vmdwinjoystick

- w -

wait() : TclTextInterp
WAIT_CURSOR : DisplayDevice
wait_cv : wkf_run_barrier_struct
waitfor : FileSpec
want_command() : UIObject
warningflags : FileRenderer
wasgrabbing : Tool
wave_f : orbthrparms
WAVEFNCEXCITATION : AtomRep
WAVEFNCSPIN : AtomRep
WAVEFNCTYPE : AtomRep
WavefrontDisplayDevice() : WavefrontDisplayDevice
Wavefunction() : Wavefunction
weight : VolMapCreateInterp, VolMapCreateDensity, axis, plane
where() : VMDTkMenu, VMDTkinterMenu, VMDMenu, VMDFltkMenu
which_frame : AtomSel, atomsel_ctxt
whichEye : DisplayDevice
whichFrame : CmdAnimDup
whichMol : CmdMolShowRep, CmdMolSmoothRep, CmdMolDrawFrames, CmdMolScaleMinmax, CmdMolNumPeriodic, CmdMolShowPeriodic, CmdMolRename, CmdMolVolume, CmdMolSSRecalc, CmdMolBondsRecalc, CmdMolReanalyze, CmdMolDeleteRep, CmdMolRepColorUpdate, CmdMolRepSelUpdate, CmdMolChangeRepItem, CmdMolChangeRep, CmdMolAddRep, CmdMolTop, CmdMolOn, CmdMolFix, CmdMolActive, CmdMolDelete, CmdMolCancel, CmdAnimDup, CmdAnimDelete, CmdAnimWriteFile
width : DispCmdLineWidth
win : xinputhandle
Win32Joystick() : Win32Joystick
WIN_KEYBD : DisplayDevice
WIN_LEFT : DisplayDevice
WIN_MIDDLE : DisplayDevice
WIN_MOUSEX : DisplayDevice
WIN_MOUSEY : DisplayDevice
WIN_NOEVENT : DisplayDevice
WIN_REDRAW : DisplayDevice
WIN_RIGHT : DisplayDevice
WIN_WHEELDOWN : DisplayDevice
WIN_WHEELUP : DisplayDevice
window() : Matrix4
windowID : glxdata
windowProc : VMDTkMenu
winsize : CmdMolSmoothRep
WIREGL : OpenGLExtensions
wiregl : OpenGLRenderer
wiremesh() : FileRenderer
workercount : wkf_threadpool_struct
workerdata : wkf_threadpool_struct
wrap_xyz() : AtomGrid
wrapCoords() : MolData
write_dx_file() : VolMapCreate
write_header() : WavefrontDisplayDevice, VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, STLDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, PSDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
write_map() : VolMapCreateILS, VolMapCreate
write_structure() : MolFilePlugin
write_timestep() : MolFilePlugin
write_trailer() : WavefrontDisplayDevice, VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, STLDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, PSDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, LibGelatoDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice

- x -

x : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice, AtomPosType, AtomEntry, MSMSCoord, Vector3D, XYZ, XY, DispCmdTextOffset, CmdTranslate
x0 : ComputeOccupancyMap_t, occthrparms_t
xad : IsoSurface
xax : IsoSurface, IsoContour
xaxis : VolumetricData
xb : FindWithinData
xinp : glxdata
xm0 : Msmpot_t
xmax : Msmpot_t
xmin : Msmpot_t
xOrig : DisplayDevice
xrange : vmdwinjoystick
xSize : DisplayDevice
xsize : VolumetricData, DispCmdVolumeTexture
xytotb : FindWithinData
xyz : FindWithinData

- y -

y : OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice, AtomPosType, AtomEntry, Vector3D, XYZ, XY, DispCmdTextOffset, CmdTranslate
y0 : ComputeOccupancyMap_t, occthrparms_t
yad : IsoSurface
yax : IsoSurface, IsoContour
yaxis : VolumetricData
yb : FindWithinData
ym0 : Msmpot_t
ymax : Msmpot_t
ymin : Msmpot_t
yn : CmdMolOn, CmdMolFix, CmdMolActive
yOrig : DisplayDevice
yrange : vmdwinjoystick
ySize : DisplayDevice
ysize : VolumetricData, DispCmdVolumeTexture
yy_at_bol : yy_buffer_state
yy_buf_pos : yy_buffer_state
yy_buf_size : yy_buffer_state
yy_buffer_status : yy_buffer_state
yy_ch_buf : yy_buffer_state
yy_fill_buffer : yy_buffer_state
yy_input_file : yy_buffer_state
yy_is_interactive : yy_buffer_state
yy_is_our_buffer : yy_buffer_state
yy_n_chars : yy_buffer_state

- z -

z : AtomPosType, AtomEntry, Vector3D, XYZ, CmdTranslate
z0 : ComputeOccupancyMap_t, occthrparms_t
zad : IsoSurface
zax : IsoSurface, IsoContour
zaxis : VolumetricData
zb : FindWithinData
zDist : DisplayDevice
zero_values() : Timestep
zeroforce() : VRPNFeedback, Feedback
zm0 : Msmpot_t
zmax : Msmpot_t
zmin : Msmpot_t
zrange : vmdwinjoystick
zsize : VolumetricData, DispCmdVolumeTexture

- ~ -

~ArtDisplayDevice() : ArtDisplayDevice
~AtomColor() : AtomColor
~AtomGrid() : AtomGrid
~AtomGridCell() : AtomGridCell
~AtomList() : AtomList
~atomparser_node() : atomparser_node
~AtomRep() : AtomRep
~AtomSel() : AtomSel
~Axes() : Axes
~BaseMolecule() : BaseMolecule
~Buttons() : Buttons
~CaveDisplayDevice() : CaveDisplayDevice
~CaveScene() : CaveScene
~CmdAnimWriteFile() : CmdAnimWriteFile
~CmdColorChange() : CmdColorChange
~CmdColorItem() : CmdColorItem
~CmdColorName() : CmdColorName
~CmdColorScaleMethod() : CmdColorScaleMethod
~CmdDisplayAxes() : CmdDisplayAxes
~CmdDisplayCacheMode() : CmdDisplayCacheMode
~CmdDisplayCueMode() : CmdDisplayCueMode
~CmdDisplayProj() : CmdDisplayProj
~CmdDisplayRenderMode() : CmdDisplayRenderMode
~CmdDisplayStageLocation() : CmdDisplayStageLocation
~CmdDisplayStereo() : CmdDisplayStereo
~CmdIMDConnect() : CmdIMDConnect
~CmdLabelAdd() : CmdLabelAdd
~CmdLabelTextFormat() : CmdLabelTextFormat
~CmdLabelTextOffset() : CmdLabelTextOffset
~CmdMaterialAdd() : CmdMaterialAdd
~CmdMaterialChange() : CmdMaterialChange
~CmdMaterialDelete() : CmdMaterialDelete
~CmdMaterialRename() : CmdMaterialRename
~CmdMenuExtensionAdd() : CmdMenuExtensionAdd
~CmdMenuExtensionRemove() : CmdMenuExtensionRemove
~CmdMenuShow() : CmdMenuShow
~CmdMolChangeRepItem() : CmdMolChangeRepItem
~CmdMolColor() : CmdMolColor
~CmdMolLoad() : CmdMolLoad
~CmdMolMaterial() : CmdMolMaterial
~CmdMolRename() : CmdMolRename
~CmdMolRep() : CmdMolRep
~CmdMolSelect() : CmdMolSelect
~CmdRender() : CmdRender
~CmdRenderOption() : CmdRenderOption
~CmdToolAddDevice() : CmdToolAddDevice
~CmdToolChange() : CmdToolChange
~CmdToolCreate() : CmdToolCreate
~CmdToolDeleteDevice() : CmdToolDeleteDevice
~ColorscaleImage() : ColorscaleImage
~Combinations() : Combinations
~Command() : Command
~CommandQueue() : CommandQueue
~CoorData() : CoorData
~CoorPluginData() : CoorPluginData
~CUDAAccel() : CUDAAccel
~Displayable() : Displayable
~DisplayDevice() : DisplayDevice
~DrawMolecule() : DrawMolecule
~DrawMoleculeMonitor() : DrawMoleculeMonitor
~DrawMolItem() : DrawMolItem
~Feedback() : Feedback
~FileRenderer() : FileRenderer
~FileRenderList() : FileRenderList
~FileSpec() : FileSpec
~FindWithinData() : FindWithinData
~FltkOpenGLDisplayDevice() : FltkOpenGLDisplayDevice
~FreeVRDisplayDevice() : FreeVRDisplayDevice
~FreeVRScene() : FreeVRScene
~GelatoDisplayDevice() : GelatoDisplayDevice
~GeometryList() : GeometryList
~GeometryMol() : GeometryMol
~GeometrySpring() : GeometrySpring
~GraphicsFltkMenu() : GraphicsFltkMenu
~GraphLabelEvent() : GraphLabelEvent
~GridList() : GridList
~IdList() : IdList
~IMDMgr() : IMDMgr
~IMDSim() : IMDSim
~IMDSimBlocking() : IMDSimBlocking
~IMDSimThread() : IMDSimThread
~IndexList() : IndexList
~Inform() : Inform
~InterpEvent() : InterpEvent
~JRegex() : JRegex
~JString() : JString
~LibGelatoDisplayDevice() : LibGelatoDisplayDevice
~LibTachyonDisplayDevice() : LibTachyonDisplayDevice
~MainFltkMenu() : MainFltkMenu
~MaterialList() : MaterialList
~Matrix4() : Matrix4
~MolData() : MolData
~Molecule() : Molecule
~MoleculeGraphics() : MoleculeGraphics
~MoleculeList() : MoleculeList
~MolFilePlugin() : MolFilePlugin
~Mouse() : Mouse
~myFl_Chart() : myFl_Chart
~NameList() : NameList< T >
~OpenGLCache() : OpenGLCache
~OpenGLDisplayDevice() : OpenGLDisplayDevice
~OpenGLExtensions() : OpenGLExtensions
~OpenGLRenderer() : OpenGLRenderer
~OpenGLShader() : OpenGLShader
~Orbital() : Orbital
~ParseTree() : ParseTree
~Pickable() : Pickable
~PickMode() : PickMode
~PickModeList() : PickModeList
~PickModeMolLabel() : PickModeMolLabel
~PickSelectionEvent() : PickSelectionEvent
~PlainTextInterp() : PlainTextInterp
~PluginMgr() : PluginMgr
~POV3DisplayDevice() : POV3DisplayDevice
~PSDisplayDevice() : PSDisplayDevice
~PythonTextInterp() : PythonTextInterp
~QMData() : QMData
~QMTimestep() : QMTimestep
~R3dDisplayDevice() : R3dDisplayDevice
~RadianceDisplayDevice() : RadianceDisplayDevice
~RayShadeDisplayDevice() : RayShadeDisplayDevice
~RenderManDisplayDevice() : RenderManDisplayDevice
~ResizeArray() : ResizeArray< T >
~Scene() : Scene
~SensorConfig() : SensorConfig
~SmallRingLinkages() : SmallRingLinkages
~SortableArray() : SortableArray< T >
~Spaceball() : Spaceball
~SpaceballTracker() : SpaceballTracker
~Stack() : Stack< T >
~STLDisplayDevice() : STLDisplayDevice
~symbol_data() : symbol_data
~SymbolTable() : SymbolTable
~Symmetry() : Symmetry
~TachyonDisplayDevice() : TachyonDisplayDevice
~TclTextInterp() : TclTextInterp
~TextInterp() : TextInterp
~Timestep() : Timestep
~Tool() : Tool
~TrajectoryReadEvent() : TrajectoryReadEvent
~UIObject() : UIObject
~UIText() : UIText
~UIVR() : UIVR
~VMDApp() : VMDApp
~VMDCollab() : VMDCollab
~VMDDisplayList() : VMDDisplayList
~VMDFltkMenu() : VMDFltkMenu
~VMDMenu() : VMDMenu
~VMDTempFile() : VMDTempFile
~VMDTkinterMenu() : VMDTkinterMenu
~VMDTkMenu() : VMDTkMenu
~VMDTracker() : VMDTracker
~VolMapCreate() : VolMapCreate
~VolMapCreateILS() : VolMapCreateILS
~VolumeTexture() : VolumeTexture
~VolumetricData() : VolumetricData
~VRPNButtons() : VRPNButtons
~VRPNFeedback() : VRPNFeedback
~VRPNTracker() : VRPNTracker
~WavefrontDisplayDevice() : WavefrontDisplayDevice
~Wavefunction() : Wavefunction
~Win32Joystick() : Win32Joystick

Generated on Mon Nov 23 01:33:20 2009 for VMD (current) by